Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TDP1Q9NUW8 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
TDP1Q9NUW8 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.14■□□□□ 0.33
TDP1Q9NUW8 YTHDF3-AS1-201ENST00000603538 718 ntBASIC17.14■□□□□ 0.33
TDP1Q9NUW8 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
TDP1Q9NUW8 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TDP1Q9NUW8 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.14■□□□□ 0.33
TDP1Q9NUW8 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
TDP1Q9NUW8 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TDP1Q9NUW8 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TDP1Q9NUW8 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TDP1Q9NUW8 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TDP1Q9NUW8 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TDP1Q9NUW8 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
TDP1Q9NUW8 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TDP1Q9NUW8 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 FAM220BP-201ENST00000377689 816 ntBASIC17.13■□□□□ 0.33
TDP1Q9NUW8 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 LINC02560-201ENST00000596379 459 ntBASIC17.13■□□□□ 0.33
TDP1Q9NUW8 AC008761.3-201ENST00000624803 892 ntBASIC17.13■□□□□ 0.33
TDP1Q9NUW8 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 AL023806.1-201ENST00000603994 1649 ntBASIC17.13■□□□□ 0.33
TDP1Q9NUW8 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.13■□□□□ 0.33
TDP1Q9NUW8 AC100757.3-201ENST00000622361 1406 ntBASIC17.13■□□□□ 0.33
TDP1Q9NUW8 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 AC004890.2-204ENST00000481968 304 ntBASIC17.12■□□□□ 0.33
TDP1Q9NUW8 AC098859.1-201ENST00000502915 1238 ntBASIC17.12■□□□□ 0.33
TDP1Q9NUW8 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 AP002490.2-201ENST00000524791 560 ntBASIC17.12■□□□□ 0.33
TDP1Q9NUW8 AL590560.3-201ENST00000623350 461 ntBASIC17.12■□□□□ 0.33
TDP1Q9NUW8 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TDP1Q9NUW8 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 AL353705.2-201ENST00000428243 662 ntBASIC17.11■□□□□ 0.33
TDP1Q9NUW8 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 AL139011.1-202ENST00000642063 584 ntBASIC17.11■□□□□ 0.33
TDP1Q9NUW8 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.11■□□□□ 0.33
TDP1Q9NUW8 AL391256.1-201ENST00000443260 1855 ntBASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms