Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
TRIM4Q9C037 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.85■□□□□ 0.29
TRIM4Q9C037 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM4Q9C037 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM4Q9C037 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.85■□□□□ 0.29
TRIM4Q9C037 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM4Q9C037 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM4Q9C037 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM4Q9C037 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM4Q9C037 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM4Q9C037 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM4Q9C037 LINC00304-203ENST00000565008 1864 ntBASIC16.84■□□□□ 0.29
TRIM4Q9C037 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
TRIM4Q9C037 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM4Q9C037 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM4Q9C037 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM4Q9C037 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
TRIM4Q9C037 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM4Q9C037 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM4Q9C037 MED15P5-201ENST00000423150 992 ntBASIC16.84■□□□□ 0.29
TRIM4Q9C037 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM4Q9C037 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM4Q9C037 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.84■□□□□ 0.29
TRIM4Q9C037 AC008608.2-201ENST00000606089 416 ntBASIC16.84■□□□□ 0.29
TRIM4Q9C037 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM4Q9C037 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM4Q9C037 AC104109.2-201ENST00000602919 1418 ntBASIC16.84■□□□□ 0.29
TRIM4Q9C037 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM4Q9C037 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
TRIM4Q9C037 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM4Q9C037 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
TRIM4Q9C037 DBET-201ENST00000630918 3363 ntBASIC16.84■□□□□ 0.29
TRIM4Q9C037 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
TRIM4Q9C037 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM4Q9C037 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM4Q9C037 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
TRIM4Q9C037 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM4Q9C037 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM4Q9C037 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM4Q9C037 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM4Q9C037 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
TRIM4Q9C037 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.29
TRIM4Q9C037 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
TRIM4Q9C037 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
TRIM4Q9C037 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
TRIM4Q9C037 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
TRIM4Q9C037 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM4Q9C037 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM4Q9C037 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM4Q9C037 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM4Q9C037 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
TRIM4Q9C037 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM4Q9C037 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM4Q9C037 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM4Q9C037 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
TRIM4Q9C037 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM4Q9C037 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.28
TRIM4Q9C037 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.83■□□□□ 0.28
TRIM4Q9C037 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
TRIM4Q9C037 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
TRIM4Q9C037 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM4Q9C037 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM4Q9C037 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM4Q9C037 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.83■□□□□ 0.28
TRIM4Q9C037 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.83■□□□□ 0.28
TRIM4Q9C037 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.83■□□□□ 0.28
TRIM4Q9C037 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM4Q9C037 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM4Q9C037 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM4Q9C037 REXO1L11P-201ENST00000620964 1927 ntBASIC16.83■□□□□ 0.28
TRIM4Q9C037 AC009949.1-201ENST00000623048 1830 ntBASIC16.83■□□□□ 0.28
TRIM4Q9C037 AC116407.3-201ENST00000623905 1129 ntBASIC16.83■□□□□ 0.28
TRIM4Q9C037 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM4Q9C037 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.83■□□□□ 0.28
TRIM4Q9C037 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM4Q9C037 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM4Q9C037 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM4Q9C037 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM4Q9C037 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM4Q9C037 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM4Q9C037 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM4Q9C037 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM4Q9C037 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM4Q9C037 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
TRIM4Q9C037 AC133963.1-201ENST00000504166 1679 ntBASIC16.82■□□□□ 0.28
TRIM4Q9C037 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM4Q9C037 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM4Q9C037 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM4Q9C037 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM4Q9C037 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM4Q9C037 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
TRIM4Q9C037 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC16.82■□□□□ 0.28
TRIM4Q9C037 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM4Q9C037 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.82■□□□□ 0.28
TRIM4Q9C037 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM4Q9C037 KRT18P65-201ENST00000439811 1286 ntBASIC16.82■□□□□ 0.28
TRIM4Q9C037 AC018712.1-201ENST00000455767 687 ntBASIC16.82■□□□□ 0.28
TRIM4Q9C037 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
TRIM4Q9C037 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM4Q9C037 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms