Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 AL691432.3-201ENST00000621860 400 ntBASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM56Q9BRZ2 PCDHA1-201ENST00000378133 2726 ntBASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 TPM4P1-201ENST00000436100 807 ntBASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 SART3-203ENST00000546611 1184 ntBASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.12■□□□□ 0.33
TRIM56Q9BRZ2 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 MTDHP3-201ENST00000594186 672 ntBASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 AC012313.10-201ENST00000623509 926 ntBASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 TUBB8P12-201ENST00000308911 1335 ntBASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 TUBB7P-202ENST00000428444 1305 ntBASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 TUBB8P7-204ENST00000567960 1332 ntBASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms