Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 DBP-204ENST00000599385 709 ntTSL 3 BASIC19.05■□□□□ 0.64
ERCC4Q92889 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC19.05■□□□□ 0.64
ERCC4Q92889 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
ERCC4Q92889 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
ERCC4Q92889 AP000550.4-202ENST00000639755 178 ntBASIC19.05■□□□□ 0.64
ERCC4Q92889 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ERCC4Q92889 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ERCC4Q92889 SIGLEC16-201ENST00000599858 1437 ntBASIC19.05■□□□□ 0.64
ERCC4Q92889 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
ERCC4Q92889 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ERCC4Q92889 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ERCC4Q92889 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ERCC4Q92889 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
ERCC4Q92889 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
ERCC4Q92889 AC243591.1-201ENST00000452967 1364 ntBASIC19.05■□□□□ 0.64
ERCC4Q92889 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
ERCC4Q92889 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC19.05■□□□□ 0.64
ERCC4Q92889 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
ERCC4Q92889 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
ERCC4Q92889 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.05■□□□□ 0.64
ERCC4Q92889 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ERCC4Q92889 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
ERCC4Q92889 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
ERCC4Q92889 FOS-208ENST00000555686 1496 ntTSL 2 BASIC19.04■□□□□ 0.64
ERCC4Q92889 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19.04■□□□□ 0.64
ERCC4Q92889 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC19.04■□□□□ 0.64
ERCC4Q92889 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ERCC4Q92889 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
ERCC4Q92889 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
ERCC4Q92889 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
ERCC4Q92889 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
ERCC4Q92889 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC19.04■□□□□ 0.64
ERCC4Q92889 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.04■□□□□ 0.64
ERCC4Q92889 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
ERCC4Q92889 POM121L3P-201ENST00000419331 1163 ntBASIC19.04■□□□□ 0.64
ERCC4Q92889 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ERCC4Q92889 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
ERCC4Q92889 AC012615.1-201ENST00000565797 1299 ntBASIC19.04■□□□□ 0.64
ERCC4Q92889 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
ERCC4Q92889 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
ERCC4Q92889 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ERCC4Q92889 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.04■□□□□ 0.64
ERCC4Q92889 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ERCC4Q92889 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ERCC4Q92889 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
ERCC4Q92889 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ERCC4Q92889 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC19.04■□□□□ 0.64
ERCC4Q92889 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
ERCC4Q92889 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ERCC4Q92889 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ERCC4Q92889 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
ERCC4Q92889 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
ERCC4Q92889 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC19.04■□□□□ 0.64
ERCC4Q92889 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ERCC4Q92889 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
ERCC4Q92889 AL590787.1-201ENST00000568856 1315 ntBASIC19.03■□□□□ 0.64
ERCC4Q92889 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ERCC4Q92889 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC19.03■□□□□ 0.64
ERCC4Q92889 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ERCC4Q92889 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC19.03■□□□□ 0.64
ERCC4Q92889 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ERCC4Q92889 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
ERCC4Q92889 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ERCC4Q92889 SLC9A7P1-201ENST00000554295 3311 ntBASIC19.03■□□□□ 0.64
ERCC4Q92889 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
ERCC4Q92889 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC19.03■□□□□ 0.64
ERCC4Q92889 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ERCC4Q92889 AC132008.2-207ENST00000454517 770 ntBASIC19.03■□□□□ 0.64
ERCC4Q92889 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC19.03■□□□□ 0.64
ERCC4Q92889 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.03■□□□□ 0.64
ERCC4Q92889 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.03■□□□□ 0.64
ERCC4Q92889 AC069148.1-201ENST00000608741 768 ntBASIC19.03■□□□□ 0.64
ERCC4Q92889 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.03■□□□□ 0.64
ERCC4Q92889 AC073592.4-201ENST00000623827 446 ntBASIC19.03■□□□□ 0.64
ERCC4Q92889 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.03■□□□□ 0.64
ERCC4Q92889 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.03■□□□□ 0.64
ERCC4Q92889 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ERCC4Q92889 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC19.03■□□□□ 0.64
ERCC4Q92889 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
ERCC4Q92889 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ERCC4Q92889 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ERCC4Q92889 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ERCC4Q92889 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
ERCC4Q92889 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC19.03■□□□□ 0.64
ERCC4Q92889 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ERCC4Q92889 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ERCC4Q92889 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC19.03■□□□□ 0.64
ERCC4Q92889 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ERCC4Q92889 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC19.02■□□□□ 0.64
ERCC4Q92889 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ERCC4Q92889 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC19.02■□□□□ 0.64
ERCC4Q92889 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC19.02■□□□□ 0.64
ERCC4Q92889 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
ERCC4Q92889 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC19.02■□□□□ 0.64
ERCC4Q92889 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC19.02■□□□□ 0.64
ERCC4Q92889 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
ERCC4Q92889 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.64
ERCC4Q92889 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC19.02■□□□□ 0.64
ERCC4Q92889 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ERCC4Q92889 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms