Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 MTDHP1-201ENST00000605323 784 ntBASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 AL671710.1-201ENST00000610245 2349 ntBASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 DGCR9-201ENST00000609630 2415 ntBASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 AP000593.1-201ENST00000393668 712 ntBASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 FAM201B-201ENST00000458407 597 ntBASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 AC006058.3-201ENST00000606217 1069 ntBASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 AL023875.1-201ENST00000640777 796 ntBASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 AC046185.3-201ENST00000623228 1824 ntBASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 AL603832.2-201ENST00000566195 2125 ntBASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms