Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VRK3Q8IV63 PMS2P7-201ENST00000506558 1336 ntBASIC16.33■□□□□ 0.2
VRK3Q8IV63 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.33■□□□□ 0.2
VRK3Q8IV63 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VRK3Q8IV63 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
VRK3Q8IV63 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VRK3Q8IV63 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.33■□□□□ 0.2
VRK3Q8IV63 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VRK3Q8IV63 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
VRK3Q8IV63 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VRK3Q8IV63 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VRK3Q8IV63 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
VRK3Q8IV63 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VRK3Q8IV63 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VRK3Q8IV63 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
VRK3Q8IV63 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.33■□□□□ 0.2
VRK3Q8IV63 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VRK3Q8IV63 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
VRK3Q8IV63 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
VRK3Q8IV63 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.33■□□□□ 0.2
VRK3Q8IV63 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VRK3Q8IV63 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
VRK3Q8IV63 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VRK3Q8IV63 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VRK3Q8IV63 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VRK3Q8IV63 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VRK3Q8IV63 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VRK3Q8IV63 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VRK3Q8IV63 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
VRK3Q8IV63 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VRK3Q8IV63 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 PCDH8P1-201ENST00000428983 2773 ntBASIC16.32■□□□□ 0.2
VRK3Q8IV63 AC140658.5-201ENST00000438532 169 ntBASIC16.32■□□□□ 0.2
VRK3Q8IV63 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 GGT3P-204ENST00000453783 1664 ntBASIC16.32■□□□□ 0.2
VRK3Q8IV63 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VRK3Q8IV63 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 AC124067.4-201ENST00000519691 2379 ntBASIC16.32■□□□□ 0.2
VRK3Q8IV63 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VRK3Q8IV63 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 AC040169.1-201ENST00000565382 521 ntBASIC16.32■□□□□ 0.2
VRK3Q8IV63 AP002472.1-201ENST00000577490 586 ntBASIC16.32■□□□□ 0.2
VRK3Q8IV63 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VRK3Q8IV63 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VRK3Q8IV63 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VRK3Q8IV63 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VRK3Q8IV63 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VRK3Q8IV63 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.32■□□□□ 0.2
VRK3Q8IV63 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
VRK3Q8IV63 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
VRK3Q8IV63 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
VRK3Q8IV63 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
VRK3Q8IV63 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
VRK3Q8IV63 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
VRK3Q8IV63 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.31■□□□□ 0.2
VRK3Q8IV63 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.31■□□□□ 0.2
VRK3Q8IV63 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.31■□□□□ 0.2
VRK3Q8IV63 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VRK3Q8IV63 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms