Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 AC019069.1-201ENST00000610008 1333 ntBASIC10.41□□□□□ -0.74
LINC00643Q86TS7 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 TSPY9P-201ENST00000440215 945 ntBASIC10.41□□□□□ -0.74
LINC00643Q86TS7 TSPY11P-201ENST00000442607 1045 ntBASIC10.41□□□□□ -0.74
LINC00643Q86TS7 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC10.41□□□□□ -0.74
LINC00643Q86TS7 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 AL359881.3-201ENST00000602640 1721 ntBASIC10.41□□□□□ -0.74
LINC00643Q86TS7 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
LINC00643Q86TS7 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 AL671710.1-201ENST00000610245 2349 ntBASIC10.4□□□□□ -0.74
LINC00643Q86TS7 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 MPST-204ENST00000404393 1329 ntTSL 5 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 AL121832.2-201ENST00000610979 668 ntBASIC10.4□□□□□ -0.74
LINC00643Q86TS7 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 SF1-220ENST00000626028 704 ntTSL 2 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 CDC14C-201ENST00000428251 1719 ntBASIC10.4□□□□□ -0.74
LINC00643Q86TS7 GGT4P-201ENST00000623672 1708 ntBASIC10.4□□□□□ -0.74
LINC00643Q86TS7 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC10.4□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms