Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 AC141586.5-201ENST00000624546 2050 ntBASIC20.19■□□□□ 0.82
CCDC88AQ3V6T2 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 AL645608.8-201ENST00000606034 2086 ntBASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 BANP-227ENST00000626016 2144 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 CLK3P2-201ENST00000427566 1453 ntBASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 SLC9A3P2-201ENST00000447821 2021 ntBASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.18■□□□□ 0.82
CCDC88AQ3V6T2 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 PARP8-218ENST00000513738 596 ntTSL 4 BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 DOC2GP-202ENST00000514950 1163 ntBASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 MFF-223ENST00000524634 647 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 AC004461.2-201ENST00000629517 803 ntBASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CCDC88AQ3V6T2 TOP3BP1-201ENST00000420768 1380 ntBASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 MIR1247-201ENST00000408206 136 ntBASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms