Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP41Q3LFD5 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.74■□□□□ 0.43
USP41Q3LFD5 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP41Q3LFD5 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP41Q3LFD5 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.74■□□□□ 0.43
USP41Q3LFD5 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP41Q3LFD5 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.74■□□□□ 0.43
USP41Q3LFD5 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
USP41Q3LFD5 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.74■□□□□ 0.43
USP41Q3LFD5 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
USP41Q3LFD5 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.74■□□□□ 0.43
USP41Q3LFD5 AC142381.1-201ENST00000426099 345 ntBASIC17.74■□□□□ 0.43
USP41Q3LFD5 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.74■□□□□ 0.43
USP41Q3LFD5 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.74■□□□□ 0.43
USP41Q3LFD5 AL512638.1-201ENST00000457493 794 ntBASIC17.74■□□□□ 0.43
USP41Q3LFD5 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
USP41Q3LFD5 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.74■□□□□ 0.43
USP41Q3LFD5 AC097493.3-201ENST00000509725 367 ntBASIC17.74■□□□□ 0.43
USP41Q3LFD5 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC17.74■□□□□ 0.43
USP41Q3LFD5 AC073389.1-201ENST00000595595 795 ntBASIC17.74■□□□□ 0.43
USP41Q3LFD5 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.74■□□□□ 0.43
USP41Q3LFD5 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP41Q3LFD5 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.74■□□□□ 0.43
USP41Q3LFD5 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP41Q3LFD5 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
USP41Q3LFD5 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
USP41Q3LFD5 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.74■□□□□ 0.43
USP41Q3LFD5 AC106820.2-201ENST00000563775 3264 ntBASIC17.74■□□□□ 0.43
USP41Q3LFD5 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP41Q3LFD5 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
USP41Q3LFD5 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP41Q3LFD5 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP41Q3LFD5 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.73■□□□□ 0.43
USP41Q3LFD5 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
USP41Q3LFD5 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
USP41Q3LFD5 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
USP41Q3LFD5 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
USP41Q3LFD5 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.73■□□□□ 0.43
USP41Q3LFD5 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC17.73■□□□□ 0.43
USP41Q3LFD5 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.73■□□□□ 0.43
USP41Q3LFD5 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.73■□□□□ 0.43
USP41Q3LFD5 TSPY16P-201ENST00000449843 468 ntBASIC17.73■□□□□ 0.43
USP41Q3LFD5 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.73■□□□□ 0.43
USP41Q3LFD5 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.73■□□□□ 0.43
USP41Q3LFD5 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.73■□□□□ 0.43
USP41Q3LFD5 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC17.73■□□□□ 0.43
USP41Q3LFD5 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.73■□□□□ 0.43
USP41Q3LFD5 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
USP41Q3LFD5 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.73■□□□□ 0.43
USP41Q3LFD5 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.73■□□□□ 0.43
USP41Q3LFD5 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
USP41Q3LFD5 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
USP41Q3LFD5 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP41Q3LFD5 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
USP41Q3LFD5 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.72■□□□□ 0.43
USP41Q3LFD5 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.72■□□□□ 0.43
USP41Q3LFD5 AC084018.2-201ENST00000613093 2607 ntBASIC17.72■□□□□ 0.43
USP41Q3LFD5 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
USP41Q3LFD5 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
USP41Q3LFD5 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
USP41Q3LFD5 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
USP41Q3LFD5 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USP41Q3LFD5 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms