Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CX3CL1P78423 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC13.54□□□□□ -0.24
CX3CL1P78423 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC13.54□□□□□ -0.24
CX3CL1P78423 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC13.54□□□□□ -0.24
CX3CL1P78423 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC13.54□□□□□ -0.24
CX3CL1P78423 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC13.54□□□□□ -0.24
CX3CL1P78423 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
CX3CL1P78423 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
CX3CL1P78423 CA12-203ENST00000422263 2556 ntTSL 2 BASIC13.54□□□□□ -0.24
CX3CL1P78423 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 PI4KAP1-204ENST00000612579 1703 ntBASIC13.54□□□□□ -0.24
CX3CL1P78423 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC13.54□□□□□ -0.24
CX3CL1P78423 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC13.54□□□□□ -0.24
CX3CL1P78423 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 KRT18P27-201ENST00000427733 1299 ntBASIC13.54□□□□□ -0.24
CX3CL1P78423 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC13.54□□□□□ -0.24
CX3CL1P78423 PPIE-208ENST00000470213 927 ntTSL 3 BASIC13.54□□□□□ -0.24
CX3CL1P78423 AC136632.2-201ENST00000512891 861 ntBASIC13.54□□□□□ -0.24
CX3CL1P78423 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC13.54□□□□□ -0.24
CX3CL1P78423 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC13.54□□□□□ -0.24
CX3CL1P78423 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC13.54□□□□□ -0.24
CX3CL1P78423 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC13.54□□□□□ -0.24
CX3CL1P78423 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC13.54□□□□□ -0.24
CX3CL1P78423 TERC-201ENST00000602385 541 ntBASIC13.54□□□□□ -0.24
CX3CL1P78423 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC13.54□□□□□ -0.24
CX3CL1P78423 MIR1199-201ENST00000621445 119 ntBASIC13.54□□□□□ -0.24
CX3CL1P78423 FAM215A-202ENST00000632077 792 ntBASIC13.54□□□□□ -0.24
CX3CL1P78423 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 PCDHB17P-201ENST00000539533 2393 ntBASIC13.54□□□□□ -0.24
CX3CL1P78423 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
CX3CL1P78423 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC13.54□□□□□ -0.24
CX3CL1P78423 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 AC026691.1-201ENST00000602502 2017 ntBASIC13.54□□□□□ -0.24
CX3CL1P78423 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC13.54□□□□□ -0.24
CX3CL1P78423 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
CX3CL1P78423 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CX3CL1P78423 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CX3CL1P78423 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CX3CL1P78423 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CX3CL1P78423 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC13.53□□□□□ -0.24
CX3CL1P78423 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC13.53□□□□□ -0.24
CX3CL1P78423 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CX3CL1P78423 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CX3CL1P78423 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CX3CL1P78423 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC13.53□□□□□ -0.24
CX3CL1P78423 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CX3CL1P78423 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CX3CL1P78423 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CX3CL1P78423 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CX3CL1P78423 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC13.53□□□□□ -0.24
CX3CL1P78423 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC13.53□□□□□ -0.24
CX3CL1P78423 AC073621.1-201ENST00000392730 636 ntBASIC13.53□□□□□ -0.24
CX3CL1P78423 AL031284.1-201ENST00000419297 478 ntBASIC13.53□□□□□ -0.24
CX3CL1P78423 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CX3CL1P78423 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC13.53□□□□□ -0.24
CX3CL1P78423 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC13.53□□□□□ -0.24
CX3CL1P78423 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC13.53□□□□□ -0.24
CX3CL1P78423 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CX3CL1P78423 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC13.53□□□□□ -0.24
CX3CL1P78423 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC13.53□□□□□ -0.24
CX3CL1P78423 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
CX3CL1P78423 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC13.53□□□□□ -0.24
CX3CL1P78423 AL805961.1-202ENST00000641562 540 ntBASIC13.53□□□□□ -0.24
CX3CL1P78423 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CX3CL1P78423 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC13.53□□□□□ -0.24
CX3CL1P78423 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CX3CL1P78423 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC13.53□□□□□ -0.24
CX3CL1P78423 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
CX3CL1P78423 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC13.53□□□□□ -0.24
CX3CL1P78423 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC13.53□□□□□ -0.24
CX3CL1P78423 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CX3CL1P78423 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CX3CL1P78423 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CX3CL1P78423 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms