Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 AC067852.2-201ENST00000590513 2313 ntBASIC14.37□□□□□ -0.11
ABCA4P78363 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
ABCA4P78363 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC14.37□□□□□ -0.11
ABCA4P78363 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC14.37□□□□□ -0.11
ABCA4P78363 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA4P78363 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.36□□□□□ -0.11
ABCA4P78363 AC241585.1-201ENST00000433527 519 ntBASIC14.36□□□□□ -0.11
ABCA4P78363 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC14.36□□□□□ -0.11
ABCA4P78363 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
ABCA4P78363 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.36□□□□□ -0.11
ABCA4P78363 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC14.36□□□□□ -0.11
ABCA4P78363 AC073389.1-201ENST00000595595 795 ntBASIC14.36□□□□□ -0.11
ABCA4P78363 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.36□□□□□ -0.11
ABCA4P78363 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC14.36□□□□□ -0.11
ABCA4P78363 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC14.36□□□□□ -0.11
ABCA4P78363 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
ABCA4P78363 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC14.36□□□□□ -0.11
ABCA4P78363 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
ABCA4P78363 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
ABCA4P78363 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC14.36□□□□□ -0.11
ABCA4P78363 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
ABCA4P78363 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
ABCA4P78363 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 SLC25A1P3-201ENST00000395415 828 ntBASIC14.36□□□□□ -0.11
ABCA4P78363 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.36□□□□□ -0.11
ABCA4P78363 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.36□□□□□ -0.11
ABCA4P78363 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC14.36□□□□□ -0.11
ABCA4P78363 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.36□□□□□ -0.11
ABCA4P78363 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC14.36□□□□□ -0.11
ABCA4P78363 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC14.36□□□□□ -0.11
ABCA4P78363 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC14.36□□□□□ -0.11
ABCA4P78363 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC14.36□□□□□ -0.11
ABCA4P78363 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
ABCA4P78363 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC14.36□□□□□ -0.11
ABCA4P78363 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
ABCA4P78363 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ABCA4P78363 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
ABCA4P78363 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
ABCA4P78363 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ABCA4P78363 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
ABCA4P78363 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
ABCA4P78363 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
ABCA4P78363 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
ABCA4P78363 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
ABCA4P78363 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC14.35□□□□□ -0.11
ABCA4P78363 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
ABCA4P78363 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC14.35□□□□□ -0.11
ABCA4P78363 AC022494.1-201ENST00000466044 728 ntBASIC14.35□□□□□ -0.11
ABCA4P78363 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.35□□□□□ -0.11
ABCA4P78363 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC14.35□□□□□ -0.11
ABCA4P78363 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC14.35□□□□□ -0.11
ABCA4P78363 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
ABCA4P78363 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC14.35□□□□□ -0.11
ABCA4P78363 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ABCA4P78363 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
ABCA4P78363 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC14.35□□□□□ -0.11
ABCA4P78363 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ABCA4P78363 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
ABCA4P78363 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
ABCA4P78363 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ABCA4P78363 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
ABCA4P78363 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
ABCA4P78363 AL671710.1-201ENST00000610245 2349 ntBASIC14.35□□□□□ -0.11
ABCA4P78363 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC14.35□□□□□ -0.11
ABCA4P78363 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ABCA4P78363 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC14.35□□□□□ -0.11
ABCA4P78363 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
ABCA4P78363 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms