Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 CYP2A7P1-201ENST00000595391 815 ntBASIC15.89■□□□□ 0.13
LIM2P55344 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.89■□□□□ 0.13
LIM2P55344 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.89■□□□□ 0.13
LIM2P55344 AP001350.2-201ENST00000625104 1094 ntBASIC15.89■□□□□ 0.13
LIM2P55344 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.89■□□□□ 0.13
LIM2P55344 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
LIM2P55344 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.89■□□□□ 0.13
LIM2P55344 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.89■□□□□ 0.13
LIM2P55344 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.89■□□□□ 0.13
LIM2P55344 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC15.89■□□□□ 0.13
LIM2P55344 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
LIM2P55344 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIM2P55344 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.89■□□□□ 0.13
LIM2P55344 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LIM2P55344 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LIM2P55344 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LIM2P55344 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LIM2P55344 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
LIM2P55344 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.88■□□□□ 0.13
LIM2P55344 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.88■□□□□ 0.13
LIM2P55344 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LIM2P55344 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.88■□□□□ 0.13
LIM2P55344 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LIM2P55344 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LIM2P55344 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC15.88■□□□□ 0.13
LIM2P55344 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LIM2P55344 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LIM2P55344 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
LIM2P55344 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.88■□□□□ 0.13
LIM2P55344 MIR940-201ENST00000401276 94 ntBASIC15.88■□□□□ 0.13
LIM2P55344 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.88■□□□□ 0.13
LIM2P55344 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.88■□□□□ 0.13
LIM2P55344 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.88■□□□□ 0.13
LIM2P55344 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
LIM2P55344 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
LIM2P55344 AC023141.13-201ENST00000604991 943 ntBASIC15.88■□□□□ 0.13
LIM2P55344 AC004877.2-201ENST00000623941 599 ntBASIC15.88■□□□□ 0.13
LIM2P55344 AC007064.4-201ENST00000637740 555 ntBASIC15.88■□□□□ 0.13
LIM2P55344 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LIM2P55344 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
LIM2P55344 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.88■□□□□ 0.13
LIM2P55344 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.88■□□□□ 0.13
LIM2P55344 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LIM2P55344 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.88■□□□□ 0.13
LIM2P55344 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LIM2P55344 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
LIM2P55344 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
LIM2P55344 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC15.88■□□□□ 0.13
LIM2P55344 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.88■□□□□ 0.13
LIM2P55344 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
LIM2P55344 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
LIM2P55344 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LIM2P55344 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
LIM2P55344 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LIM2P55344 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIM2P55344 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIM2P55344 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC15.87■□□□□ 0.13
LIM2P55344 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC15.87■□□□□ 0.13
LIM2P55344 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIM2P55344 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
LIM2P55344 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC15.87■□□□□ 0.13
LIM2P55344 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.87■□□□□ 0.13
LIM2P55344 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LIM2P55344 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIM2P55344 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LIM2P55344 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIM2P55344 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.87■□□□□ 0.13
LIM2P55344 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIM2P55344 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.87■□□□□ 0.13
LIM2P55344 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.87■□□□□ 0.13
LIM2P55344 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.87■□□□□ 0.13
LIM2P55344 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.87■□□□□ 0.13
LIM2P55344 AL671883.3-201ENST00000603274 991 ntBASIC15.87■□□□□ 0.13
LIM2P55344 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.87■□□□□ 0.13
LIM2P55344 AL645728.2-201ENST00000641974 660 ntBASIC15.87■□□□□ 0.13
LIM2P55344 AL139011.1-202ENST00000642063 584 ntBASIC15.87■□□□□ 0.13
LIM2P55344 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.87■□□□□ 0.13
LIM2P55344 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.87■□□□□ 0.13
LIM2P55344 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.87■□□□□ 0.13
LIM2P55344 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIM2P55344 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
LIM2P55344 BCAR1-209ENST00000546196 1340 ntBASIC15.87■□□□□ 0.13
LIM2P55344 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIM2P55344 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIM2P55344 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.87■□□□□ 0.13
LIM2P55344 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LIM2P55344 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LIM2P55344 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIM2P55344 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LIM2P55344 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.86■□□□□ 0.13
LIM2P55344 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIM2P55344 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms