Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC16.49■□□□□ 0.23
LIMK1P53667 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMK1P53667 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16.49■□□□□ 0.23
LIMK1P53667 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.49■□□□□ 0.23
LIMK1P53667 INE1-201ENST00000456273 945 ntBASIC16.49■□□□□ 0.23
LIMK1P53667 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMK1P53667 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.49■□□□□ 0.23
LIMK1P53667 AC011495.1-201ENST00000498085 584 ntBASIC16.49■□□□□ 0.23
LIMK1P53667 AC092658.1-201ENST00000505836 891 ntBASIC16.49■□□□□ 0.23
LIMK1P53667 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMK1P53667 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
LIMK1P53667 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LIMK1P53667 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.49■□□□□ 0.23
LIMK1P53667 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
LIMK1P53667 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
LIMK1P53667 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.49■□□□□ 0.23
LIMK1P53667 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.49■□□□□ 0.23
LIMK1P53667 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.49■□□□□ 0.23
LIMK1P53667 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMK1P53667 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMK1P53667 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMK1P53667 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMK1P53667 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.49■□□□□ 0.23
LIMK1P53667 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMK1P53667 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
LIMK1P53667 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMK1P53667 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.49■□□□□ 0.23
LIMK1P53667 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LIMK1P53667 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIMK1P53667 AC020763.4-201ENST00000623414 4170 ntBASIC16.48■□□□□ 0.23
LIMK1P53667 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.48■□□□□ 0.23
LIMK1P53667 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.48■□□□□ 0.23
LIMK1P53667 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.48■□□□□ 0.23
LIMK1P53667 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
LIMK1P53667 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIMK1P53667 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIMK1P53667 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.48■□□□□ 0.23
LIMK1P53667 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
LIMK1P53667 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIMK1P53667 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
LIMK1P53667 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIMK1P53667 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.48■□□□□ 0.23
LIMK1P53667 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIMK1P53667 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.48■□□□□ 0.23
LIMK1P53667 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIMK1P53667 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIMK1P53667 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.48■□□□□ 0.23
LIMK1P53667 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
LIMK1P53667 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIMK1P53667 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIMK1P53667 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIMK1P53667 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC16.48■□□□□ 0.23
LIMK1P53667 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIMK1P53667 AC104794.3-201ENST00000566840 1248 ntBASIC16.48■□□□□ 0.23
LIMK1P53667 ARL16-202ENST00000570561 768 ntTSL 2 BASIC16.48■□□□□ 0.23
LIMK1P53667 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC16.48■□□□□ 0.23
LIMK1P53667 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIMK1P53667 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.48■□□□□ 0.23
LIMK1P53667 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.48■□□□□ 0.23
LIMK1P53667 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIMK1P53667 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIMK1P53667 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIMK1P53667 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMK1P53667 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMK1P53667 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
LIMK1P53667 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMK1P53667 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LIMK1P53667 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMK1P53667 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
LIMK1P53667 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LIMK1P53667 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMK1P53667 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMK1P53667 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMK1P53667 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
LIMK1P53667 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.47■□□□□ 0.23
LIMK1P53667 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC16.47■□□□□ 0.23
LIMK1P53667 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMK1P53667 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
LIMK1P53667 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LIMK1P53667 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LIMK1P53667 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.47■□□□□ 0.23
LIMK1P53667 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.47■□□□□ 0.23
LIMK1P53667 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMK1P53667 POLE2-203ENST00000553805 496 ntTSL 2 BASIC16.47■□□□□ 0.23
LIMK1P53667 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC16.47■□□□□ 0.23
LIMK1P53667 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.47■□□□□ 0.23
LIMK1P53667 MIR3909-201ENST00000579518 119 ntBASIC16.47■□□□□ 0.23
LIMK1P53667 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.47■□□□□ 0.23
LIMK1P53667 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMK1P53667 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMK1P53667 AL391825.1-201ENST00000457671 1364 ntBASIC16.47■□□□□ 0.23
LIMK1P53667 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMK1P53667 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMK1P53667 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
LIMK1P53667 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LIMK1P53667 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
LIMK1P53667 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIMK1P53667 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LIMK1P53667 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.46■□□□□ 0.23
LIMK1P53667 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms