Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
MSH6P52701 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC22.88■■□□□ 1.25
MSH6P52701 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC22.88■■□□□ 1.25
MSH6P52701 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
MSH6P52701 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
MSH6P52701 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC22.88■■□□□ 1.25
MSH6P52701 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
MSH6P52701 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC22.88■■□□□ 1.25
MSH6P52701 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
MSH6P52701 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
MSH6P52701 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
MSH6P52701 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC22.88■■□□□ 1.25
MSH6P52701 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
MSH6P52701 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
MSH6P52701 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC22.88■■□□□ 1.25
MSH6P52701 WDR53-204ENST00000433160 887 ntTSL 5 BASIC22.88■■□□□ 1.25
MSH6P52701 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC22.88■■□□□ 1.25
MSH6P52701 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC22.88■■□□□ 1.25
MSH6P52701 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC22.88■■□□□ 1.25
MSH6P52701 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC22.88■■□□□ 1.25
MSH6P52701 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC22.88■■□□□ 1.25
MSH6P52701 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.25
MSH6P52701 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
MSH6P52701 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
MSH6P52701 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC22.87■■□□□ 1.25
MSH6P52701 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC22.87■■□□□ 1.25
MSH6P52701 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
MSH6P52701 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
MSH6P52701 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
MSH6P52701 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC22.87■■□□□ 1.25
MSH6P52701 PXK-206ENST00000463280 2825 ntTSL 2 BASIC22.87■■□□□ 1.25
MSH6P52701 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
MSH6P52701 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
MSH6P52701 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
MSH6P52701 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC22.87■■□□□ 1.25
MSH6P52701 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
MSH6P52701 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
MSH6P52701 FAM21FP-201ENST00000426241 1131 ntBASIC22.87■■□□□ 1.25
MSH6P52701 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC22.87■■□□□ 1.25
MSH6P52701 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC22.87■■□□□ 1.25
MSH6P52701 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC22.87■■□□□ 1.25
MSH6P52701 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC22.87■■□□□ 1.25
MSH6P52701 MIR6069-201ENST00000620069 79 ntBASIC22.87■■□□□ 1.25
MSH6P52701 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC22.87■■□□□ 1.25
MSH6P52701 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
MSH6P52701 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
MSH6P52701 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
MSH6P52701 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
MSH6P52701 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC22.86■■□□□ 1.25
MSH6P52701 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC22.86■■□□□ 1.25
MSH6P52701 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC22.86■■□□□ 1.25
MSH6P52701 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
MSH6P52701 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
MSH6P52701 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
MSH6P52701 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
MSH6P52701 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC22.86■■□□□ 1.25
MSH6P52701 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC22.86■■□□□ 1.25
MSH6P52701 CSF2RBP1-201ENST00000447905 391 ntBASIC22.86■■□□□ 1.25
MSH6P52701 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC22.86■■□□□ 1.25
MSH6P52701 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC22.86■■□□□ 1.25
MSH6P52701 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC22.86■■□□□ 1.25
MSH6P52701 AC026979.3-201ENST00000607315 403 ntBASIC22.86■■□□□ 1.25
MSH6P52701 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
MSH6P52701 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC22.86■■□□□ 1.25
MSH6P52701 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
MSH6P52701 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC22.85■■□□□ 1.25
MSH6P52701 AL390961.4-201ENST00000623958 2535 ntBASIC22.85■■□□□ 1.25
MSH6P52701 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC22.85■■□□□ 1.25
MSH6P52701 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC22.85■■□□□ 1.25
MSH6P52701 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
MSH6P52701 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC22.85■■□□□ 1.25
MSH6P52701 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
MSH6P52701 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC22.85■■□□□ 1.25
MSH6P52701 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC22.85■■□□□ 1.25
MSH6P52701 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
MSH6P52701 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
MSH6P52701 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC22.85■■□□□ 1.25
MSH6P52701 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
MSH6P52701 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
MSH6P52701 MIR1247-201ENST00000408206 136 ntBASIC22.85■■□□□ 1.25
MSH6P52701 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC22.85■■□□□ 1.25
MSH6P52701 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC22.85■■□□□ 1.25
MSH6P52701 FO681548.1-201ENST00000455617 1132 ntBASIC22.85■■□□□ 1.25
MSH6P52701 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC22.85■■□□□ 1.25
MSH6P52701 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
MSH6P52701 AC104596.2-201ENST00000512793 793 ntBASIC22.85■■□□□ 1.25
MSH6P52701 RHOQP1-201ENST00000555758 579 ntBASIC22.85■■□□□ 1.25
MSH6P52701 AC243960.2-201ENST00000600996 747 ntBASIC22.85■■□□□ 1.25
MSH6P52701 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC22.85■■□□□ 1.25
MSH6P52701 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC22.85■■□□□ 1.25
MSH6P52701 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC22.85■■□□□ 1.25
MSH6P52701 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC22.85■■□□□ 1.25
MSH6P52701 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
MSH6P52701 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
MSH6P52701 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
MSH6P52701 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
MSH6P52701 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
MSH6P52701 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
MSH6P52701 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
MSH6P52701 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms