Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CTCFP49711 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTCFP49711 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CTCFP49711 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CTCFP49711 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTCFP49711 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CTCFP49711 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CTCFP49711 BTBD6P1-201ENST00000412176 1267 ntBASIC19.28■□□□□ 0.68
CTCFP49711 AL080243.2-201ENST00000418783 582 ntBASIC19.28■□□□□ 0.68
CTCFP49711 AC114501.2-201ENST00000439631 535 ntBASIC19.28■□□□□ 0.68
CTCFP49711 USP32P1-208ENST00000506594 1164 ntBASIC19.28■□□□□ 0.68
CTCFP49711 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC19.28■□□□□ 0.68
CTCFP49711 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC19.28■□□□□ 0.68
CTCFP49711 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTCFP49711 RAB35-202ENST00000534951 939 ntTSL 2 BASIC19.28■□□□□ 0.68
CTCFP49711 AL079307.3-201ENST00000556114 283 ntBASIC19.28■□□□□ 0.68
CTCFP49711 APRT-204ENST00000563655 709 ntTSL 5 BASIC19.28■□□□□ 0.68
CTCFP49711 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC19.28■□□□□ 0.68
CTCFP49711 DERL2-202ENST00000570848 657 ntTSL 5 BASIC19.28■□□□□ 0.68
CTCFP49711 SRD5A3P1-201ENST00000603021 949 ntBASIC19.28■□□□□ 0.68
CTCFP49711 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTCFP49711 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.28■□□□□ 0.68
CTCFP49711 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTCFP49711 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CTCFP49711 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC19.28■□□□□ 0.68
CTCFP49711 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.28■□□□□ 0.68
CTCFP49711 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTCFP49711 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CTCFP49711 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CTCFP49711 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTCFP49711 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.28■□□□□ 0.68
CTCFP49711 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.27■□□□□ 0.68
CTCFP49711 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTCFP49711 AL135999.2-201ENST00000622438 1686 ntBASIC19.27■□□□□ 0.68
CTCFP49711 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.27■□□□□ 0.68
CTCFP49711 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTCFP49711 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CTCFP49711 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTCFP49711 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTCFP49711 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTCFP49711 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.27■□□□□ 0.68
CTCFP49711 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTCFP49711 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTCFP49711 ENSA-206ENST00000361631 725 ntTSL 2 BASIC19.27■□□□□ 0.68
CTCFP49711 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CTCFP49711 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTCFP49711 AC098850.1-201ENST00000419919 790 ntBASIC19.27■□□□□ 0.68
CTCFP49711 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC19.27■□□□□ 0.68
CTCFP49711 CALR4P-201ENST00000431943 946 ntBASIC19.27■□□□□ 0.68
CTCFP49711 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC19.27■□□□□ 0.68
CTCFP49711 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC19.27■□□□□ 0.68
CTCFP49711 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CTCFP49711 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC19.27■□□□□ 0.68
CTCFP49711 AC044860.1-202ENST00000559481 777 ntBASIC19.27■□□□□ 0.68
CTCFP49711 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC19.27■□□□□ 0.68
CTCFP49711 HCG18-245ENST00000602550 559 ntTSL 4 BASIC19.27■□□□□ 0.68
CTCFP49711 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.27■□□□□ 0.68
CTCFP49711 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC19.27■□□□□ 0.68
CTCFP49711 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.27■□□□□ 0.68
CTCFP49711 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
CTCFP49711 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CTCFP49711 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
CTCFP49711 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CTCFP49711 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
CTCFP49711 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
CTCFP49711 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CTCFP49711 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CTCFP49711 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC19.27■□□□□ 0.67
CTCFP49711 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CTCFP49711 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CTCFP49711 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CTCFP49711 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CTCFP49711 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CTCFP49711 LOX-206ENST00000639739 1626 ntTSL 5 BASIC19.26■□□□□ 0.67
CTCFP49711 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC19.26■□□□□ 0.67
CTCFP49711 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC19.26■□□□□ 0.67
CTCFP49711 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.26■□□□□ 0.67
CTCFP49711 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CTCFP49711 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CTCFP49711 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC19.26■□□□□ 0.67
CTCFP49711 HINT2P1-201ENST00000419438 481 ntBASIC19.26■□□□□ 0.67
CTCFP49711 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CTCFP49711 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC19.26■□□□□ 0.67
CTCFP49711 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC19.26■□□□□ 0.67
CTCFP49711 AC073389.1-201ENST00000595595 795 ntBASIC19.26■□□□□ 0.67
CTCFP49711 AC010319.3-201ENST00000597028 470 ntBASIC19.26■□□□□ 0.67
CTCFP49711 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CTCFP49711 TEX48-202ENST00000612244 662 ntTSL 3 BASIC19.26■□□□□ 0.67
CTCFP49711 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC19.26■□□□□ 0.67
CTCFP49711 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CTCFP49711 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CTCFP49711 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CTCFP49711 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.26■□□□□ 0.67
CTCFP49711 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CTCFP49711 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CTCFP49711 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.25■□□□□ 0.67
CTCFP49711 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CTCFP49711 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTCFP49711 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CTCFP49711 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms