Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.67■□□□□ 0.42
LHX1P48742 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.67■□□□□ 0.42
LHX1P48742 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
LHX1P48742 AC027307.2-201ENST00000591252 911 ntBASIC17.67■□□□□ 0.42
LHX1P48742 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.67■□□□□ 0.42
LHX1P48742 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.67■□□□□ 0.42
LHX1P48742 AC009093.7-201ENST00000623853 1223 ntBASIC17.67■□□□□ 0.42
LHX1P48742 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LHX1P48742 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LHX1P48742 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LHX1P48742 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC17.67■□□□□ 0.42
LHX1P48742 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LHX1P48742 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.67■□□□□ 0.42
LHX1P48742 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
LHX1P48742 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
LHX1P48742 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
LHX1P48742 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
LHX1P48742 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
LHX1P48742 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.66■□□□□ 0.42
LHX1P48742 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.66■□□□□ 0.42
LHX1P48742 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.66■□□□□ 0.42
LHX1P48742 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
LHX1P48742 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.66■□□□□ 0.42
LHX1P48742 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.66■□□□□ 0.42
LHX1P48742 KRT18P32-201ENST00000424695 1287 ntBASIC17.66■□□□□ 0.42
LHX1P48742 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.66■□□□□ 0.42
LHX1P48742 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.66■□□□□ 0.42
LHX1P48742 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.66■□□□□ 0.42
LHX1P48742 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
LHX1P48742 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.66■□□□□ 0.42
LHX1P48742 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.66■□□□□ 0.42
LHX1P48742 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
LHX1P48742 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 UXT-AS1-201ENST00000590504 1525 ntBASIC17.66■□□□□ 0.42
LHX1P48742 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.66■□□□□ 0.42
LHX1P48742 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
LHX1P48742 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.66■□□□□ 0.42
LHX1P48742 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.66■□□□□ 0.42
LHX1P48742 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
LHX1P48742 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LHX1P48742 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LHX1P48742 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.65■□□□□ 0.42
LHX1P48742 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LHX1P48742 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.65■□□□□ 0.42
LHX1P48742 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LHX1P48742 MIR346-201ENST00000362234 95 ntBASIC17.65■□□□□ 0.42
LHX1P48742 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.65■□□□□ 0.42
LHX1P48742 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LHX1P48742 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
LHX1P48742 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.65■□□□□ 0.42
LHX1P48742 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LHX1P48742 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.65■□□□□ 0.42
LHX1P48742 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.65■□□□□ 0.42
LHX1P48742 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.65■□□□□ 0.42
LHX1P48742 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LHX1P48742 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.65■□□□□ 0.42
LHX1P48742 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.65■□□□□ 0.42
LHX1P48742 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.65■□□□□ 0.42
LHX1P48742 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.65■□□□□ 0.42
LHX1P48742 AC020765.3-201ENST00000613051 740 ntBASIC17.65■□□□□ 0.42
LHX1P48742 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.65■□□□□ 0.42
LHX1P48742 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.65■□□□□ 0.42
LHX1P48742 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
LHX1P48742 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LHX1P48742 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.65■□□□□ 0.42
LHX1P48742 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LHX1P48742 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LHX1P48742 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.65■□□□□ 0.42
LHX1P48742 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LHX1P48742 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LHX1P48742 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.65■□□□□ 0.42
LHX1P48742 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LHX1P48742 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LHX1P48742 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LHX1P48742 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LHX1P48742 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
LHX1P48742 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms