Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN9P43378 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.37■□□□□ 0.37
PTPN9P43378 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN9P43378 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.37■□□□□ 0.37
PTPN9P43378 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.37■□□□□ 0.37
PTPN9P43378 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
PTPN9P43378 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
PTPN9P43378 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
PTPN9P43378 AL009183.1-201ENST00000603760 355 ntBASIC17.37■□□□□ 0.37
PTPN9P43378 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN9P43378 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN9P43378 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
PTPN9P43378 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.37■□□□□ 0.37
PTPN9P43378 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
PTPN9P43378 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
PTPN9P43378 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN9P43378 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.37■□□□□ 0.37
PTPN9P43378 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN9P43378 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN9P43378 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
PTPN9P43378 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN9P43378 AC124067.4-201ENST00000519691 2379 ntBASIC17.37■□□□□ 0.37
PTPN9P43378 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.37■□□□□ 0.37
PTPN9P43378 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.37■□□□□ 0.37
PTPN9P43378 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PTPN9P43378 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN9P43378 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN9P43378 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN9P43378 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
PTPN9P43378 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN9P43378 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN9P43378 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN9P43378 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN9P43378 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
PTPN9P43378 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN9P43378 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN9P43378 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN9P43378 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
PTPN9P43378 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN9P43378 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.36■□□□□ 0.37
PTPN9P43378 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.36■□□□□ 0.37
PTPN9P43378 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.36■□□□□ 0.37
PTPN9P43378 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.36■□□□□ 0.37
PTPN9P43378 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.36■□□□□ 0.37
PTPN9P43378 AC020765.3-201ENST00000613051 740 ntBASIC17.36■□□□□ 0.37
PTPN9P43378 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN9P43378 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN9P43378 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN9P43378 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
PTPN9P43378 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
PTPN9P43378 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN9P43378 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.36■□□□□ 0.37
PTPN9P43378 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN9P43378 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN9P43378 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN9P43378 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN9P43378 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN9P43378 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
PTPN9P43378 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.36■□□□□ 0.37
PTPN9P43378 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN9P43378 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN9P43378 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
PTPN9P43378 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN9P43378 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN9P43378 PKD1P1-201ENST00000458669 6805 ntBASIC17.35■□□□□ 0.37
PTPN9P43378 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN9P43378 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
PTPN9P43378 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
PTPN9P43378 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.35■□□□□ 0.37
PTPN9P43378 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
PTPN9P43378 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
PTPN9P43378 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.35■□□□□ 0.37
PTPN9P43378 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.35■□□□□ 0.37
PTPN9P43378 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN9P43378 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.35■□□□□ 0.37
PTPN9P43378 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
PTPN9P43378 MIR574-201ENST00000385209 96 ntBASIC17.35■□□□□ 0.37
PTPN9P43378 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.35■□□□□ 0.37
PTPN9P43378 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.35■□□□□ 0.37
PTPN9P43378 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.35■□□□□ 0.37
PTPN9P43378 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN9P43378 KRT18P58-201ENST00000527480 1120 ntBASIC17.35■□□□□ 0.37
PTPN9P43378 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN9P43378 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PTPN9P43378 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.35■□□□□ 0.37
PTPN9P43378 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.35■□□□□ 0.37
PTPN9P43378 AL513190.1-201ENST00000621254 727 ntBASIC17.35■□□□□ 0.37
PTPN9P43378 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN9P43378 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN9P43378 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.35■□□□□ 0.37
PTPN9P43378 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PTPN9P43378 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.35■□□□□ 0.37
PTPN9P43378 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN9P43378 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.35■□□□□ 0.37
PTPN9P43378 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
PTPN9P43378 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.35■□□□□ 0.37
PTPN9P43378 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.35■□□□□ 0.37
PTPN9P43378 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
PTPN9P43378 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
PTPN9P43378 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms