Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CROCCP4-201ENST00000457096 498 ntBASIC14.58□□□□□ -0.08
COL8A1P27658 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC14.58□□□□□ -0.08
COL8A1P27658 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.58□□□□□ -0.08
COL8A1P27658 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
COL8A1P27658 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC14.58□□□□□ -0.08
COL8A1P27658 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 AL031055.1-201ENST00000606362 631 ntBASIC14.58□□□□□ -0.08
COL8A1P27658 AL589739.1-201ENST00000607720 493 ntBASIC14.58□□□□□ -0.08
COL8A1P27658 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 AL133373.2-201ENST00000623187 2828 ntBASIC14.58□□□□□ -0.08
COL8A1P27658 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC14.58□□□□□ -0.08
COL8A1P27658 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
COL8A1P27658 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC14.58□□□□□ -0.08
COL8A1P27658 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
COL8A1P27658 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.58□□□□□ -0.08
COL8A1P27658 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
COL8A1P27658 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL8A1P27658 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC14.57□□□□□ -0.08
COL8A1P27658 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
COL8A1P27658 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL8A1P27658 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC14.57□□□□□ -0.08
COL8A1P27658 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL8A1P27658 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
COL8A1P27658 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL8A1P27658 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL8A1P27658 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL8A1P27658 AL023806.1-201ENST00000603994 1649 ntBASIC14.57□□□□□ -0.08
COL8A1P27658 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL8A1P27658 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL8A1P27658 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL8A1P27658 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL8A1P27658 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL8A1P27658 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.57□□□□□ -0.08
COL8A1P27658 AC142381.1-201ENST00000426099 345 ntBASIC14.57□□□□□ -0.08
COL8A1P27658 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.57□□□□□ -0.08
COL8A1P27658 TPI1-206ENST00000488464 791 ntTSL 5 BASIC14.57□□□□□ -0.08
COL8A1P27658 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC14.57□□□□□ -0.08
COL8A1P27658 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC14.57□□□□□ -0.08
COL8A1P27658 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC14.57□□□□□ -0.08
COL8A1P27658 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC14.57□□□□□ -0.08
COL8A1P27658 PCDHB18P-201ENST00000524813 2368 ntBASIC14.57□□□□□ -0.08
COL8A1P27658 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL8A1P27658 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL8A1P27658 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL8A1P27658 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL8A1P27658 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
COL8A1P27658 AL391825.1-201ENST00000457671 1364 ntBASIC14.57□□□□□ -0.08
COL8A1P27658 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
COL8A1P27658 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL8A1P27658 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL8A1P27658 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
COL8A1P27658 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
COL8A1P27658 HNRNPRP1-201ENST00000453465 1695 ntBASIC14.56□□□□□ -0.08
COL8A1P27658 CETN4P-206ENST00000642099 2168 ntBASIC14.56□□□□□ -0.08
COL8A1P27658 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
COL8A1P27658 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.56□□□□□ -0.08
COL8A1P27658 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
COL8A1P27658 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.56□□□□□ -0.08
COL8A1P27658 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC14.56□□□□□ -0.08
COL8A1P27658 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.56□□□□□ -0.08
COL8A1P27658 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.56□□□□□ -0.08
COL8A1P27658 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
COL8A1P27658 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.56□□□□□ -0.08
COL8A1P27658 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.56□□□□□ -0.08
COL8A1P27658 DOC2GP-202ENST00000514950 1163 ntBASIC14.56□□□□□ -0.08
COL8A1P27658 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC14.56□□□□□ -0.08
COL8A1P27658 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC14.56□□□□□ -0.08
COL8A1P27658 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
COL8A1P27658 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC14.56□□□□□ -0.08
COL8A1P27658 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC14.56□□□□□ -0.08
COL8A1P27658 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms