Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL11A1P12107 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
COL11A1P12107 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL11A1P12107 BTBD7P1-201ENST00000447253 1453 ntBASIC18.75■□□□□ 0.59
COL11A1P12107 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC18.74■□□□□ 0.59
COL11A1P12107 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
COL11A1P12107 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL11A1P12107 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL11A1P12107 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC18.74■□□□□ 0.59
COL11A1P12107 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL11A1P12107 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL11A1P12107 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC18.74■□□□□ 0.59
COL11A1P12107 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL11A1P12107 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.74■□□□□ 0.59
COL11A1P12107 AL109936.8-201ENST00000641772 604 ntBASIC18.74■□□□□ 0.59
COL11A1P12107 AC078925.2-201ENST00000624013 1973 ntBASIC18.74■□□□□ 0.59
COL11A1P12107 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL11A1P12107 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
COL11A1P12107 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL11A1P12107 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
COL11A1P12107 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
COL11A1P12107 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
COL11A1P12107 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.74■□□□□ 0.59
COL11A1P12107 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL11A1P12107 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL11A1P12107 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
COL11A1P12107 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL11A1P12107 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL11A1P12107 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL11A1P12107 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL11A1P12107 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.74■□□□□ 0.59
COL11A1P12107 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL11A1P12107 AL589702.1-201ENST00000641229 1509 ntBASIC18.74■□□□□ 0.59
COL11A1P12107 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL11A1P12107 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL11A1P12107 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
COL11A1P12107 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL11A1P12107 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL11A1P12107 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC18.74■□□□□ 0.59
COL11A1P12107 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC18.74■□□□□ 0.59
COL11A1P12107 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL11A1P12107 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL11A1P12107 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC18.74■□□□□ 0.59
COL11A1P12107 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL11A1P12107 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
COL11A1P12107 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.73■□□□□ 0.59
COL11A1P12107 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL11A1P12107 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL11A1P12107 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL11A1P12107 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC18.73■□□□□ 0.59
COL11A1P12107 RN7SL618P-201ENST00000477850 296 ntBASIC18.73■□□□□ 0.59
COL11A1P12107 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
COL11A1P12107 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC18.73■□□□□ 0.59
COL11A1P12107 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC18.73■□□□□ 0.59
COL11A1P12107 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC18.73■□□□□ 0.59
COL11A1P12107 5S_rRNA.22-201ENST00000614916 106 ntBASIC18.73■□□□□ 0.59
COL11A1P12107 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC18.73■□□□□ 0.59
COL11A1P12107 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL11A1P12107 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC18.73■□□□□ 0.59
COL11A1P12107 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL11A1P12107 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL11A1P12107 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.73■□□□□ 0.59
COL11A1P12107 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL11A1P12107 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL11A1P12107 AL391825.1-201ENST00000457671 1364 ntBASIC18.73■□□□□ 0.59
COL11A1P12107 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL11A1P12107 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL11A1P12107 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL11A1P12107 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC18.73■□□□□ 0.59
COL11A1P12107 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL11A1P12107 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC18.73■□□□□ 0.59
COL11A1P12107 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.73■□□□□ 0.59
COL11A1P12107 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC18.73■□□□□ 0.59
COL11A1P12107 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL11A1P12107 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL11A1P12107 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
COL11A1P12107 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL11A1P12107 RN7SL837P-201ENST00000463010 287 ntBASIC18.72■□□□□ 0.59
COL11A1P12107 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC18.72■□□□□ 0.59
COL11A1P12107 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.72■□□□□ 0.59
COL11A1P12107 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC18.72■□□□□ 0.59
COL11A1P12107 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC18.72■□□□□ 0.59
COL11A1P12107 AL358472.5-202ENST00000641448 1267 ntBASIC18.72■□□□□ 0.59
COL11A1P12107 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC18.72■□□□□ 0.59
COL11A1P12107 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18.72■□□□□ 0.59
COL11A1P12107 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL11A1P12107 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL11A1P12107 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL11A1P12107 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL11A1P12107 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.72■□□□□ 0.59
COL11A1P12107 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL11A1P12107 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL11A1P12107 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL11A1P12107 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL11A1P12107 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC18.72■□□□□ 0.59
COL11A1P12107 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC18.72■□□□□ 0.59
COL11A1P12107 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL11A1P12107 SPDYE19P-201ENST00000338590 713 ntBASIC18.72■□□□□ 0.59
COL11A1P12107 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL11A1P12107 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms