Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.21■□□□□ 0.19
CLDN9O95484 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLDN9O95484 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.21■□□□□ 0.19
CLDN9O95484 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLDN9O95484 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
CLDN9O95484 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
CLDN9O95484 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
CLDN9O95484 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CLDN9O95484 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.21■□□□□ 0.18
CLDN9O95484 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
CLDN9O95484 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
CLDN9O95484 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.21■□□□□ 0.18
CLDN9O95484 GGT3P-204ENST00000453783 1664 ntBASIC16.21■□□□□ 0.18
CLDN9O95484 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.21■□□□□ 0.18
CLDN9O95484 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
CLDN9O95484 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CLDN9O95484 PCDH8P1-201ENST00000428983 2773 ntBASIC16.21■□□□□ 0.18
CLDN9O95484 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLDN9O95484 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.2■□□□□ 0.18
CLDN9O95484 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.2■□□□□ 0.18
CLDN9O95484 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLDN9O95484 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.2■□□□□ 0.18
CLDN9O95484 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.2■□□□□ 0.18
CLDN9O95484 AL512652.2-201ENST00000625156 1716 ntBASIC16.2■□□□□ 0.18
CLDN9O95484 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CLDN9O95484 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLDN9O95484 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.2■□□□□ 0.18
CLDN9O95484 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.2■□□□□ 0.18
CLDN9O95484 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLDN9O95484 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLDN9O95484 RPS2P28-201ENST00000314255 741 ntBASIC16.2■□□□□ 0.18
CLDN9O95484 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLDN9O95484 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLDN9O95484 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
CLDN9O95484 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.2■□□□□ 0.18
CLDN9O95484 HNRNPDP1-201ENST00000439535 754 ntBASIC16.2■□□□□ 0.18
CLDN9O95484 AC018712.1-201ENST00000455767 687 ntBASIC16.2■□□□□ 0.18
CLDN9O95484 IGHV3-65-201ENST00000523210 341 ntBASIC16.2■□□□□ 0.18
CLDN9O95484 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.2■□□□□ 0.18
CLDN9O95484 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.2■□□□□ 0.18
CLDN9O95484 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.2■□□□□ 0.18
CLDN9O95484 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
CLDN9O95484 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLDN9O95484 AC005412.3-201ENST00000580309 715 ntBASIC16.2■□□□□ 0.18
CLDN9O95484 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.2■□□□□ 0.18
CLDN9O95484 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.2■□□□□ 0.18
CLDN9O95484 AP001350.2-201ENST00000625104 1094 ntBASIC16.2■□□□□ 0.18
CLDN9O95484 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.2■□□□□ 0.18
CLDN9O95484 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.2■□□□□ 0.18
CLDN9O95484 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLDN9O95484 SLC22A20-204ENST00000530038 1673 ntBASIC16.2■□□□□ 0.18
CLDN9O95484 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.2■□□□□ 0.18
CLDN9O95484 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLDN9O95484 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.2■□□□□ 0.18
CLDN9O95484 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLDN9O95484 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.2■□□□□ 0.18
CLDN9O95484 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLDN9O95484 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLDN9O95484 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CLDN9O95484 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLDN9O95484 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLDN9O95484 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.19■□□□□ 0.18
CLDN9O95484 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLDN9O95484 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.19■□□□□ 0.18
CLDN9O95484 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLDN9O95484 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLDN9O95484 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLDN9O95484 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.19■□□□□ 0.18
CLDN9O95484 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CLDN9O95484 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLDN9O95484 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLDN9O95484 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CLDN9O95484 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLDN9O95484 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLDN9O95484 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLDN9O95484 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
CLDN9O95484 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.19■□□□□ 0.18
CLDN9O95484 KRT18P67-201ENST00000432816 1264 ntBASIC16.19■□□□□ 0.18
CLDN9O95484 DUSP5P1-201ENST00000441325 1139 ntBASIC16.19■□□□□ 0.18
CLDN9O95484 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.19■□□□□ 0.18
CLDN9O95484 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CLDN9O95484 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLDN9O95484 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.19■□□□□ 0.18
CLDN9O95484 CYP2A7P1-201ENST00000595391 815 ntBASIC16.19■□□□□ 0.18
CLDN9O95484 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLDN9O95484 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.19■□□□□ 0.18
CLDN9O95484 AC005593.1-201ENST00000624894 515 ntBASIC16.19■□□□□ 0.18
CLDN9O95484 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.19■□□□□ 0.18
CLDN9O95484 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLDN9O95484 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLDN9O95484 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
CLDN9O95484 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLDN9O95484 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLDN9O95484 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.19■□□□□ 0.18
CLDN9O95484 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
CLDN9O95484 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CLDN9O95484 FER1L4-210ENST00000615531 5998 ntBASIC16.19■□□□□ 0.18
CLDN9O95484 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLDN9O95484 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CLDN9O95484 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms