Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CDKL5O76039 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDKL5O76039 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CDKL5O76039 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CDKL5O76039 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19.45■□□□□ 0.7
CDKL5O76039 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC19.45■□□□□ 0.7
CDKL5O76039 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.45■□□□□ 0.7
CDKL5O76039 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDKL5O76039 AL645728.2-201ENST00000641974 660 ntBASIC19.45■□□□□ 0.7
CDKL5O76039 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDKL5O76039 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CDKL5O76039 ACE-204ENST00000428043 5120 ntTSL 2 BASIC19.45■□□□□ 0.7
CDKL5O76039 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC19.45■□□□□ 0.7
CDKL5O76039 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.45■□□□□ 0.7
CDKL5O76039 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDKL5O76039 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC19.45■□□□□ 0.7
CDKL5O76039 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDKL5O76039 AL031731.1-201ENST00000642131 2094 ntBASIC19.45■□□□□ 0.7
CDKL5O76039 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
CDKL5O76039 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDKL5O76039 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDKL5O76039 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CDKL5O76039 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CDKL5O76039 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC19.45■□□□□ 0.7
CDKL5O76039 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.44■□□□□ 0.7
CDKL5O76039 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CDKL5O76039 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDKL5O76039 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDKL5O76039 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.44■□□□□ 0.7
CDKL5O76039 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CDKL5O76039 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDKL5O76039 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CDKL5O76039 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.44■□□□□ 0.7
CDKL5O76039 MTRF1LP2-201ENST00000506027 1122 ntBASIC19.44■□□□□ 0.7
CDKL5O76039 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.44■□□□□ 0.7
CDKL5O76039 POLD4-207ENST00000531239 584 ntTSL 2 BASIC19.44■□□□□ 0.7
CDKL5O76039 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC19.44■□□□□ 0.7
CDKL5O76039 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC19.44■□□□□ 0.7
CDKL5O76039 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDKL5O76039 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC19.44■□□□□ 0.7
CDKL5O76039 KLK8-205ENST00000593490 267 ntTSL 3 BASIC19.44■□□□□ 0.7
CDKL5O76039 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC19.44■□□□□ 0.7
CDKL5O76039 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
CDKL5O76039 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDKL5O76039 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDKL5O76039 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CDKL5O76039 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CDKL5O76039 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CDKL5O76039 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC19.44■□□□□ 0.7
CDKL5O76039 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CDKL5O76039 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDKL5O76039 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC19.44■□□□□ 0.7
CDKL5O76039 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC19.44■□□□□ 0.7
CDKL5O76039 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CDKL5O76039 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.43■□□□□ 0.7
CDKL5O76039 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC19.43■□□□□ 0.7
CDKL5O76039 PCDHB19P-201ENST00000570871 2371 ntBASIC19.43■□□□□ 0.7
CDKL5O76039 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CDKL5O76039 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
CDKL5O76039 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.43■□□□□ 0.7
CDKL5O76039 ME2P1-201ENST00000426028 1970 ntBASIC19.43■□□□□ 0.7
CDKL5O76039 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CDKL5O76039 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC19.43■□□□□ 0.7
CDKL5O76039 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 HCG4B-203ENST00000450128 991 ntBASIC19.43■□□□□ 0.7
CDKL5O76039 AL513480.1-201ENST00000451731 511 ntBASIC19.43■□□□□ 0.7
CDKL5O76039 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC19.43■□□□□ 0.7
CDKL5O76039 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.43■□□□□ 0.7
CDKL5O76039 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.43■□□□□ 0.7
CDKL5O76039 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC19.43■□□□□ 0.7
CDKL5O76039 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.43■□□□□ 0.7
CDKL5O76039 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.43■□□□□ 0.7
CDKL5O76039 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC19.43■□□□□ 0.7
CDKL5O76039 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CDKL5O76039 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.43■□□□□ 0.7
CDKL5O76039 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CDKL5O76039 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CDKL5O76039 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDKL5O76039 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms