Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.47■□□□□ 0.23
VPS4BO75351 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS4BO75351 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS4BO75351 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS4BO75351 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS4BO75351 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
VPS4BO75351 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS4BO75351 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
VPS4BO75351 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
VPS4BO75351 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS4BO75351 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS4BO75351 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS4BO75351 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS4BO75351 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS4BO75351 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS4BO75351 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
VPS4BO75351 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.46■□□□□ 0.23
VPS4BO75351 LINC00895-201ENST00000629028 1637 ntBASIC16.46■□□□□ 0.23
VPS4BO75351 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
VPS4BO75351 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.46■□□□□ 0.23
VPS4BO75351 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS4BO75351 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.46■□□□□ 0.23
VPS4BO75351 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS4BO75351 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.46■□□□□ 0.23
VPS4BO75351 RPSAP43-201ENST00000402237 625 ntBASIC16.46■□□□□ 0.23
VPS4BO75351 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS4BO75351 FGFR3P6-201ENST00000457012 610 ntBASIC16.46■□□□□ 0.23
VPS4BO75351 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.46■□□□□ 0.23
VPS4BO75351 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.46■□□□□ 0.23
VPS4BO75351 AC145285.3-201ENST00000564603 959 ntBASIC16.46■□□□□ 0.23
VPS4BO75351 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS4BO75351 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.23
VPS4BO75351 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS4BO75351 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS4BO75351 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS4BO75351 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS4BO75351 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS4BO75351 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.46■□□□□ 0.23
VPS4BO75351 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS4BO75351 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
VPS4BO75351 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS4BO75351 AC022188.1-201ENST00000620960 1664 ntBASIC16.46■□□□□ 0.23
VPS4BO75351 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.46■□□□□ 0.22
VPS4BO75351 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.46■□□□□ 0.22
VPS4BO75351 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
VPS4BO75351 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
VPS4BO75351 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
VPS4BO75351 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
VPS4BO75351 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4BO75351 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4BO75351 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
VPS4BO75351 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS4BO75351 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS4BO75351 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4BO75351 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS4BO75351 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4BO75351 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4BO75351 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4BO75351 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4BO75351 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4BO75351 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS4BO75351 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4BO75351 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4BO75351 GPX1P2-201ENST00000429271 606 ntBASIC16.45■□□□□ 0.22
VPS4BO75351 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS4BO75351 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS4BO75351 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.45■□□□□ 0.22
VPS4BO75351 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4BO75351 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS4BO75351 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4BO75351 TP73-AS1-210ENST00000637775 1455 ntBASIC16.45■□□□□ 0.22
VPS4BO75351 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
VPS4BO75351 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4BO75351 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS4BO75351 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4BO75351 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4BO75351 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS4BO75351 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4BO75351 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS4BO75351 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
VPS4BO75351 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.44■□□□□ 0.22
VPS4BO75351 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS4BO75351 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
VPS4BO75351 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VPS4BO75351 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS4BO75351 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
VPS4BO75351 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VPS4BO75351 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.44■□□□□ 0.22
VPS4BO75351 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VPS4BO75351 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 133.7 ms