Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC20.81■□□□□ 0.92
CACNA1FO60840 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CACNA1FO60840 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC20.81■□□□□ 0.92
CACNA1FO60840 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
CACNA1FO60840 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC20.81■□□□□ 0.92
CACNA1FO60840 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CACNA1FO60840 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CACNA1FO60840 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CACNA1FO60840 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CACNA1FO60840 AC005622.1-201ENST00000636801 1703 ntBASIC20.81■□□□□ 0.92
CACNA1FO60840 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
CACNA1FO60840 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC20.81■□□□□ 0.92
CACNA1FO60840 PPP6R2P1-201ENST00000450880 1275 ntBASIC20.81■□□□□ 0.92
CACNA1FO60840 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC20.81■□□□□ 0.92
CACNA1FO60840 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC20.81■□□□□ 0.92
CACNA1FO60840 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC20.81■□□□□ 0.92
CACNA1FO60840 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC20.81■□□□□ 0.92
CACNA1FO60840 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CACNA1FO60840 MIR4453-201ENST00000584019 89 ntBASIC20.81■□□□□ 0.92
CACNA1FO60840 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CACNA1FO60840 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CACNA1FO60840 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CACNA1FO60840 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CACNA1FO60840 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC20.8■□□□□ 0.92
CACNA1FO60840 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CACNA1FO60840 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CACNA1FO60840 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CACNA1FO60840 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
CACNA1FO60840 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CACNA1FO60840 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CACNA1FO60840 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CACNA1FO60840 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC20.8■□□□□ 0.92
CACNA1FO60840 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC20.8■□□□□ 0.92
CACNA1FO60840 AC107890.1-201ENST00000422478 521 ntBASIC20.8■□□□□ 0.92
CACNA1FO60840 AC098859.1-201ENST00000502915 1238 ntBASIC20.8■□□□□ 0.92
CACNA1FO60840 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC20.8■□□□□ 0.92
CACNA1FO60840 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC20.8■□□□□ 0.92
CACNA1FO60840 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
CACNA1FO60840 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CACNA1FO60840 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CACNA1FO60840 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CACNA1FO60840 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CACNA1FO60840 REXO1L8P-201ENST00000604378 1897 ntBASIC20.79■□□□□ 0.92
CACNA1FO60840 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CACNA1FO60840 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CACNA1FO60840 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CACNA1FO60840 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CACNA1FO60840 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CACNA1FO60840 RBM39-205ENST00000397370 612 ntTSL 2 BASIC20.79■□□□□ 0.92
CACNA1FO60840 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC20.79■□□□□ 0.92
CACNA1FO60840 AL353705.2-201ENST00000428243 662 ntBASIC20.79■□□□□ 0.92
CACNA1FO60840 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC20.79■□□□□ 0.92
CACNA1FO60840 KLF2P3-201ENST00000451977 1087 ntBASIC20.79■□□□□ 0.92
CACNA1FO60840 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CACNA1FO60840 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CACNA1FO60840 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC20.79■□□□□ 0.92
CACNA1FO60840 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CACNA1FO60840 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CACNA1FO60840 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CACNA1FO60840 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.79■□□□□ 0.92
CACNA1FO60840 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CACNA1FO60840 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CACNA1FO60840 KRT8P12-202ENST00000472924 1397 ntBASIC20.79■□□□□ 0.92
CACNA1FO60840 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC20.79■□□□□ 0.92
CACNA1FO60840 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
CACNA1FO60840 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CACNA1FO60840 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.79■□□□□ 0.92
CACNA1FO60840 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CACNA1FO60840 FAM86GP-201ENST00000448322 971 ntBASIC20.79■□□□□ 0.92
CACNA1FO60840 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC20.79■□□□□ 0.92
CACNA1FO60840 CCDC74BP1-201ENST00000508880 1123 ntBASIC20.79■□□□□ 0.92
CACNA1FO60840 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC20.79■□□□□ 0.92
CACNA1FO60840 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC20.79■□□□□ 0.92
CACNA1FO60840 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC20.79■□□□□ 0.92
CACNA1FO60840 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC20.79■□□□□ 0.92
CACNA1FO60840 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CACNA1FO60840 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC20.79■□□□□ 0.92
CACNA1FO60840 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1FO60840 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC20.78■□□□□ 0.92
CACNA1FO60840 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1FO60840 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
CACNA1FO60840 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC20.78■□□□□ 0.92
CACNA1FO60840 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1FO60840 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1FO60840 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1FO60840 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC20.78■□□□□ 0.92
CACNA1FO60840 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC20.78■□□□□ 0.92
CACNA1FO60840 CYMP-203ENST00000474680 1263 ntBASIC20.78■□□□□ 0.92
CACNA1FO60840 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1FO60840 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
CACNA1FO60840 ALOX12P2-203ENST00000570921 1945 ntBASIC20.78■□□□□ 0.92
CACNA1FO60840 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1FO60840 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1FO60840 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1FO60840 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1FO60840 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1FO60840 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CACNA1FO60840 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1FO60840 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC20.78■□□□□ 0.92
CACNA1FO60840 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms