Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP1O15259 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
NPHP1O15259 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP1O15259 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP1O15259 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP1O15259 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC21.04■□□□□ 0.96
NPHP1O15259 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
NPHP1O15259 GRAP-202ENST00000395635 834 ntTSL 2 BASIC21.04■□□□□ 0.96
NPHP1O15259 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
NPHP1O15259 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC21.04■□□□□ 0.96
NPHP1O15259 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP1O15259 PIN1P1-201ENST00000412108 996 ntBASIC21.04■□□□□ 0.96
NPHP1O15259 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP1O15259 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC21.04■□□□□ 0.96
NPHP1O15259 MIR3909-201ENST00000579518 119 ntBASIC21.04■□□□□ 0.96
NPHP1O15259 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC21.04■□□□□ 0.96
NPHP1O15259 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP1O15259 EGFEM1P-202ENST00000431685 1563 ntBASIC21.04■□□□□ 0.96
NPHP1O15259 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP1O15259 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC21.04■□□□□ 0.96
NPHP1O15259 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP1O15259 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP1O15259 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
NPHP1O15259 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP1O15259 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC21.04■□□□□ 0.96
NPHP1O15259 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP1O15259 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP1O15259 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP1O15259 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP1O15259 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP1O15259 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP1O15259 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC21.03■□□□□ 0.96
NPHP1O15259 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP1O15259 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP1O15259 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
NPHP1O15259 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.03■□□□□ 0.96
NPHP1O15259 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC21.03■□□□□ 0.96
NPHP1O15259 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP1O15259 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP1O15259 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP1O15259 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP1O15259 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC21.03■□□□□ 0.96
NPHP1O15259 AC004890.2-204ENST00000481968 304 ntBASIC21.03■□□□□ 0.96
NPHP1O15259 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC21.03■□□□□ 0.96
NPHP1O15259 AL138918.1-201ENST00000568306 659 ntBASIC21.03■□□□□ 0.96
NPHP1O15259 NKG7-205ENST00000600427 520 ntTSL 3 BASIC21.03■□□□□ 0.96
NPHP1O15259 AC018529.1-201ENST00000613063 361 ntBASIC21.03■□□□□ 0.96
NPHP1O15259 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC21.03■□□□□ 0.96
NPHP1O15259 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP1O15259 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP1O15259 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
NPHP1O15259 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC21.03■□□□□ 0.96
NPHP1O15259 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.03■□□□□ 0.96
NPHP1O15259 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
NPHP1O15259 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC21.03■□□□□ 0.96
NPHP1O15259 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP1O15259 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
NPHP1O15259 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP1O15259 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP1O15259 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP1O15259 AC133963.1-201ENST00000504166 1679 ntBASIC21.02■□□□□ 0.96
NPHP1O15259 GRAMD4P3-201ENST00000621665 1669 ntBASIC21.02■□□□□ 0.96
NPHP1O15259 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP1O15259 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP1O15259 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP1O15259 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP1O15259 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
NPHP1O15259 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP1O15259 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC21.02■□□□□ 0.96
NPHP1O15259 COQ6-210ENST00000554920 649 ntTSL 3 BASIC21.02■□□□□ 0.96
NPHP1O15259 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
NPHP1O15259 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC21.02■□□□□ 0.96
NPHP1O15259 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC21.02■□□□□ 0.96
NPHP1O15259 AL008721.1-201ENST00000609964 604 ntBASIC21.02■□□□□ 0.96
NPHP1O15259 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC21.02■□□□□ 0.96
NPHP1O15259 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC21.02■□□□□ 0.96
NPHP1O15259 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP1O15259 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP1O15259 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
NPHP1O15259 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP1O15259 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC21.02■□□□□ 0.96
NPHP1O15259 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC21.02■□□□□ 0.95
NPHP1O15259 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
NPHP1O15259 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP1O15259 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC21.01■□□□□ 0.95
NPHP1O15259 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP1O15259 FOS-208ENST00000555686 1496 ntTSL 2 BASIC21.01■□□□□ 0.95
NPHP1O15259 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP1O15259 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
NPHP1O15259 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP1O15259 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP1O15259 AC135050.7-201ENST00000624508 2218 ntBASIC21.01■□□□□ 0.95
NPHP1O15259 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
NPHP1O15259 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP1O15259 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP1O15259 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
NPHP1O15259 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
NPHP1O15259 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP1O15259 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC21.01■□□□□ 0.95
NPHP1O15259 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms