Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC28.14■■■□□ 2.1
CUX2O14529 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
CUX2O14529 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC28.14■■■□□ 2.1
CUX2O14529 LINC00896-202ENST00000609602 2128 ntBASIC28.14■■■□□ 2.1
CUX2O14529 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC28.14■■■□□ 2.1
CUX2O14529 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC28.14■■■□□ 2.1
CUX2O14529 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC28.14■■■□□ 2.1
CUX2O14529 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC28.14■■■□□ 2.1
CUX2O14529 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC28.14■■■□□ 2.1
CUX2O14529 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC28.14■■■□□ 2.09
CUX2O14529 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
CUX2O14529 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
CUX2O14529 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC28.14■■■□□ 2.09
CUX2O14529 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC28.14■■■□□ 2.09
CUX2O14529 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC28.14■■■□□ 2.09
CUX2O14529 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC28.14■■■□□ 2.09
CUX2O14529 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
CUX2O14529 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC28.14■■■□□ 2.09
CUX2O14529 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC28.14■■■□□ 2.09
CUX2O14529 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC28.14■■■□□ 2.09
CUX2O14529 AC020914.3-201ENST00000594712 304 ntBASIC28.14■■■□□ 2.09
CUX2O14529 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC28.13■■■□□ 2.09
CUX2O14529 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
CUX2O14529 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC28.13■■■□□ 2.09
CUX2O14529 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
CUX2O14529 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC28.13■■■□□ 2.09
CUX2O14529 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC28.13■■■□□ 2.09
CUX2O14529 DEK-201ENST00000244776 1441 ntTSL 2 BASIC28.13■■■□□ 2.09
CUX2O14529 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC28.13■■■□□ 2.09
CUX2O14529 MAGEA5-201ENST00000446757 942 ntBASIC28.13■■■□□ 2.09
CUX2O14529 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC28.13■■■□□ 2.09
CUX2O14529 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC28.13■■■□□ 2.09
CUX2O14529 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC28.13■■■□□ 2.09
CUX2O14529 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC28.13■■■□□ 2.09
CUX2O14529 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC28.13■■■□□ 2.09
CUX2O14529 AP001350.2-201ENST00000625104 1094 ntBASIC28.13■■■□□ 2.09
CUX2O14529 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC28.13■■■□□ 2.09
CUX2O14529 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
CUX2O14529 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC28.13■■■□□ 2.09
CUX2O14529 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC28.13■■■□□ 2.09
CUX2O14529 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC28.12■■■□□ 2.09
CUX2O14529 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC28.12■■■□□ 2.09
CUX2O14529 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC28.12■■■□□ 2.09
CUX2O14529 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
CUX2O14529 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC28.12■■■□□ 2.09
CUX2O14529 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC28.12■■■□□ 2.09
CUX2O14529 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC28.12■■■□□ 2.09
CUX2O14529 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
CUX2O14529 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC28.12■■■□□ 2.09
CUX2O14529 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC28.12■■■□□ 2.09
CUX2O14529 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC28.12■■■□□ 2.09
CUX2O14529 FTLP1-201ENST00000449155 526 ntBASIC28.12■■■□□ 2.09
CUX2O14529 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC28.12■■■□□ 2.09
CUX2O14529 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC28.12■■■□□ 2.09
CUX2O14529 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC28.12■■■□□ 2.09
CUX2O14529 MIR6756-201ENST00000616240 63 ntBASIC28.12■■■□□ 2.09
CUX2O14529 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC28.12■■■□□ 2.09
CUX2O14529 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC28.12■■■□□ 2.09
CUX2O14529 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC28.12■■■□□ 2.09
CUX2O14529 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
CUX2O14529 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC28.12■■■□□ 2.09
CUX2O14529 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC28.11■■■□□ 2.09
CUX2O14529 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
CUX2O14529 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC28.11■■■□□ 2.09
CUX2O14529 GOLGA2P9-201ENST00000596977 1937 ntBASIC28.11■■■□□ 2.09
CUX2O14529 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
CUX2O14529 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC28.11■■■□□ 2.09
CUX2O14529 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC28.11■■■□□ 2.09
CUX2O14529 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
CUX2O14529 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
CUX2O14529 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC28.11■■■□□ 2.09
CUX2O14529 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC28.11■■■□□ 2.09
CUX2O14529 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
CUX2O14529 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC28.11■■■□□ 2.09
CUX2O14529 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC28.11■■■□□ 2.09
CUX2O14529 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC28.1■■■□□ 2.09
CUX2O14529 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
CUX2O14529 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
CUX2O14529 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
CUX2O14529 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
CUX2O14529 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC28.1■■■□□ 2.09
CUX2O14529 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC28.1■■■□□ 2.09
CUX2O14529 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC28.1■■■□□ 2.09
CUX2O14529 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
CUX2O14529 AC074044.1-201ENST00000609673 707 ntBASIC28.1■■■□□ 2.09
CUX2O14529 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC28.1■■■□□ 2.09
CUX2O14529 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
CUX2O14529 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC28.1■■■□□ 2.09
CUX2O14529 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC28.1■■■□□ 2.09
CUX2O14529 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC28.1■■■□□ 2.09
CUX2O14529 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
CUX2O14529 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
CUX2O14529 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
CUX2O14529 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
CUX2O14529 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
CUX2O14529 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC28.09■■■□□ 2.09
CUX2O14529 AC098859.1-201ENST00000502915 1238 ntBASIC28.09■■■□□ 2.09
CUX2O14529 KLK3-211ENST00000597483 810 ntTSL 2 BASIC28.09■■■□□ 2.09
CUX2O14529 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC28.09■■■□□ 2.09
CUX2O14529 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms