Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
SDCBPO00560 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC14.32□□□□□ -0.12
SDCBPO00560 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
SDCBPO00560 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SDCBPO00560 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
SDCBPO00560 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC14.32□□□□□ -0.12
SDCBPO00560 NORAD-201ENST00000565493 5339 ntBASIC14.32□□□□□ -0.12
SDCBPO00560 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SDCBPO00560 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SDCBPO00560 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDCBPO00560 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC14.31□□□□□ -0.12
SDCBPO00560 INTS4P1-201ENST00000438455 1935 ntBASIC14.31□□□□□ -0.12
SDCBPO00560 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
SDCBPO00560 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDCBPO00560 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SDCBPO00560 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDCBPO00560 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDCBPO00560 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDCBPO00560 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC14.31□□□□□ -0.12
SDCBPO00560 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
SDCBPO00560 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDCBPO00560 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC14.31□□□□□ -0.12
SDCBPO00560 FUOM-202ENST00000368551 628 ntTSL 3 BASIC14.31□□□□□ -0.12
SDCBPO00560 RCN1P2-201ENST00000398357 915 ntBASIC14.31□□□□□ -0.12
SDCBPO00560 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC14.31□□□□□ -0.12
SDCBPO00560 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC14.31□□□□□ -0.12
SDCBPO00560 POM121L3P-201ENST00000419331 1163 ntBASIC14.31□□□□□ -0.12
SDCBPO00560 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
SDCBPO00560 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC14.31□□□□□ -0.12
SDCBPO00560 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC14.31□□□□□ -0.12
SDCBPO00560 COX5A-202ENST00000562233 441 ntTSL 3 BASIC14.31□□□□□ -0.12
SDCBPO00560 AC099336.1-202ENST00000602961 463 ntBASIC14.31□□□□□ -0.12
SDCBPO00560 NPAP1P7-201ENST00000613027 823 ntBASIC14.31□□□□□ -0.12
SDCBPO00560 AD001527.2-201ENST00000622994 785 ntBASIC14.31□□□□□ -0.12
SDCBPO00560 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC14.31□□□□□ -0.12
SDCBPO00560 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC14.31□□□□□ -0.12
SDCBPO00560 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC14.31□□□□□ -0.12
SDCBPO00560 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.31□□□□□ -0.12
SDCBPO00560 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDCBPO00560 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDCBPO00560 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDCBPO00560 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDCBPO00560 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDCBPO00560 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.31□□□□□ -0.12
SDCBPO00560 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDCBPO00560 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC14.31□□□□□ -0.12
SDCBPO00560 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SDCBPO00560 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDCBPO00560 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
SDCBPO00560 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SDCBPO00560 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
SDCBPO00560 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDCBPO00560 AC005052.1-201ENST00000625181 2492 ntBASIC14.31□□□□□ -0.12
SDCBPO00560 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDCBPO00560 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC14.31□□□□□ -0.12
SDCBPO00560 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
SDCBPO00560 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDCBPO00560 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDCBPO00560 MBP-202ENST00000355994 2772 ntTSL 5 BASIC14.3□□□□□ -0.12
SDCBPO00560 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDCBPO00560 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDCBPO00560 AC024909.3-201ENST00000611513 2257 ntBASIC14.3□□□□□ -0.12
SDCBPO00560 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.3□□□□□ -0.12
SDCBPO00560 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDCBPO00560 AC132938.5-201ENST00000624980 1813 ntBASIC14.3□□□□□ -0.12
SDCBPO00560 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC14.3□□□□□ -0.12
SDCBPO00560 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDCBPO00560 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDCBPO00560 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC14.3□□□□□ -0.12
SDCBPO00560 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC14.3□□□□□ -0.12
SDCBPO00560 NUS1P2-201ENST00000417358 873 ntBASIC14.3□□□□□ -0.12
SDCBPO00560 ATP5G2P1-201ENST00000433580 426 ntBASIC14.3□□□□□ -0.12
SDCBPO00560 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
SDCBPO00560 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC14.3□□□□□ -0.12
SDCBPO00560 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC14.3□□□□□ -0.12
SDCBPO00560 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC14.3□□□□□ -0.12
SDCBPO00560 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC14.3□□□□□ -0.12
SDCBPO00560 AP002490.2-201ENST00000524791 560 ntBASIC14.3□□□□□ -0.12
SDCBPO00560 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC14.3□□□□□ -0.12
SDCBPO00560 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC14.3□□□□□ -0.12
SDCBPO00560 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC14.3□□□□□ -0.12
SDCBPO00560 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SDCBPO00560 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SDCBPO00560 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC14.3□□□□□ -0.12
SDCBPO00560 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
SDCBPO00560 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDCBPO00560 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC14.3□□□□□ -0.12
SDCBPO00560 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC14.3□□□□□ -0.12
SDCBPO00560 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SDCBPO00560 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDCBPO00560 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDCBPO00560 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDCBPO00560 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC14.3□□□□□ -0.12
SDCBPO00560 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC14.3□□□□□ -0.12
SDCBPO00560 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.3□□□□□ -0.12
SDCBPO00560 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDCBPO00560 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDCBPO00560 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
SDCBPO00560 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SDCBPO00560 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms