Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC12.77□□□□□ -0.36
COL6A5A8TX70 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL6A5A8TX70 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL6A5A8TX70 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
COL6A5A8TX70 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
COL6A5A8TX70 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL6A5A8TX70 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL6A5A8TX70 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC12.77□□□□□ -0.37
COL6A5A8TX70 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
COL6A5A8TX70 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL6A5A8TX70 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL6A5A8TX70 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL6A5A8TX70 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL6A5A8TX70 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL6A5A8TX70 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL6A5A8TX70 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
COL6A5A8TX70 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
COL6A5A8TX70 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL6A5A8TX70 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC12.77□□□□□ -0.37
COL6A5A8TX70 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL6A5A8TX70 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL6A5A8TX70 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL6A5A8TX70 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL6A5A8TX70 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL6A5A8TX70 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL6A5A8TX70 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC12.77□□□□□ -0.37
COL6A5A8TX70 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC12.77□□□□□ -0.37
COL6A5A8TX70 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL6A5A8TX70 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 AL442647.2-201ENST00000429864 857 ntBASIC12.76□□□□□ -0.37
COL6A5A8TX70 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 RPL8-205ENST00000527914 551 ntTSL 3 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 KRT90P-201ENST00000549264 1064 ntBASIC12.76□□□□□ -0.37
COL6A5A8TX70 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 MIR6756-201ENST00000616240 63 ntBASIC12.76□□□□□ -0.37
COL6A5A8TX70 AC079336.7-201ENST00000623428 1078 ntBASIC12.76□□□□□ -0.37
COL6A5A8TX70 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL6A5A8TX70 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL6A5A8TX70 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 HTR7P1-202ENST00000624664 4411 ntBASIC12.76□□□□□ -0.37
COL6A5A8TX70 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL6A5A8TX70 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL6A5A8TX70 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL6A5A8TX70 ARTN-209ENST00000479128 471 ntTSL 3 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 AP006547.1-201ENST00000563435 692 ntBASIC12.76□□□□□ -0.37
COL6A5A8TX70 AC036164.1-201ENST00000570544 333 ntBASIC12.76□□□□□ -0.37
COL6A5A8TX70 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 MIR4750-201ENST00000584564 56 ntBASIC12.76□□□□□ -0.37
COL6A5A8TX70 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL6A5A8TX70 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 AC026979.3-201ENST00000607315 403 ntBASIC12.76□□□□□ -0.37
COL6A5A8TX70 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL6A5A8TX70 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL6A5A8TX70 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL6A5A8TX70 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL6A5A8TX70 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL6A5A8TX70 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL6A5A8TX70 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL6A5A8TX70 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL6A5A8TX70 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL6A5A8TX70 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL6A5A8TX70 REXO1L9P-201ENST00000604264 2108 ntBASIC12.76□□□□□ -0.37
COL6A5A8TX70 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL6A5A8TX70 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC12.76□□□□□ -0.37
COL6A5A8TX70 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 RPL28-203ENST00000428193 573 ntTSL 2 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 FTH1P14-201ENST00000482930 551 ntBASIC12.75□□□□□ -0.37
COL6A5A8TX70 RNA5SP410-201ENST00000516285 106 ntBASIC12.75□□□□□ -0.37
COL6A5A8TX70 RPL28-207ENST00000558815 616 ntTSL 2 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 QPRT-203ENST00000562473 579 ntTSL 3 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 KLK3-211ENST00000597483 810 ntTSL 2 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
COL6A5A8TX70 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL6A5A8TX70 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms