Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 Z97985.1-201ENST00000332270 946 ntBASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 HNRNPA1P23-201ENST00000491091 1133 ntBASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 AC093909.1-201ENST00000504731 1122 ntBASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 AC107918.2-201ENST00000530817 355 ntBASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 KRT126P-201ENST00000549467 1181 ntBASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 FAM215A-202ENST00000632077 792 ntBASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 KRT8P39-201ENST00000396270 1433 ntBASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS9D1Q9Y2B5 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 HNRNPDP1-201ENST00000439535 754 ntBASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 AL160237.2-201ENST00000556165 472 ntBASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
VPS9D1Q9Y2B5 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 AC079781.3-201ENST00000449110 356 ntBASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms