Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS4AQ9UN37 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 ABCD1P5-201ENST00000445663 754 ntBASIC16.29■□□□□ 0.2
VPS4AQ9UN37 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 AC105339.3-201ENST00000560043 636 ntBASIC16.29■□□□□ 0.2
VPS4AQ9UN37 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 SNHG9-202ENST00000564014 471 ntBASIC16.29■□□□□ 0.2
VPS4AQ9UN37 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS4AQ9UN37 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 AC007967.2-201ENST00000432613 625 ntBASIC16.28■□□□□ 0.2
VPS4AQ9UN37 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 AC011467.2-201ENST00000598425 242 ntBASIC16.28■□□□□ 0.2
VPS4AQ9UN37 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 AL596442.2-201ENST00000610240 980 ntBASIC16.28■□□□□ 0.2
VPS4AQ9UN37 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms