Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 BEX3-201ENST00000361298 921 ntTSL 2 BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 AL022342.1-201ENST00000400363 863 ntBASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 DDT-204ENST00000404092 805 ntTSL 3 BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 HMGA1P7-201ENST00000406908 502 ntBASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 MED15P5-201ENST00000423150 992 ntBASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 MAL2-202ENST00000531508 892 ntTSL 3 BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 SLC9A3P2-201ENST00000447821 2021 ntBASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 AC027601.4-201ENST00000611259 610 ntBASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 AQP6-205ENST00000618286 829 ntTSL 5 BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 AC124067.4-201ENST00000519691 2379 ntBASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 BCAR1-209ENST00000546196 1340 ntBASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 ALOX12P2-203ENST00000570921 1945 ntBASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
SMC4Q9NTJ3 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 RPL28-209ENST00000560055 670 ntTSL 3 BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 AC004877.2-201ENST00000623941 599 ntBASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 AL645728.2-201ENST00000641974 660 ntBASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 AL031731.1-201ENST00000642131 2094 ntBASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
SMC4Q9NTJ3 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.03
SMC4Q9NTJ3 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
SMC4Q9NTJ3 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
SMC4Q9NTJ3 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC21.45■■□□□ 1.02
SMC4Q9NTJ3 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
SMC4Q9NTJ3 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SMC4Q9NTJ3 WDR53-204ENST00000433160 887 ntTSL 5 BASIC21.45■■□□□ 1.02
SMC4Q9NTJ3 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
SMC4Q9NTJ3 MTRF1LP2-201ENST00000506027 1122 ntBASIC21.45■■□□□ 1.02
SMC4Q9NTJ3 AL031432.2-201ENST00000566714 459 ntBASIC21.45■■□□□ 1.02
SMC4Q9NTJ3 AL928711.1-201ENST00000570165 459 ntBASIC21.45■■□□□ 1.02
SMC4Q9NTJ3 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC21.45■■□□□ 1.02
SMC4Q9NTJ3 AC023141.13-201ENST00000604991 943 ntBASIC21.45■■□□□ 1.02
SMC4Q9NTJ3 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC21.45■■□□□ 1.02
SMC4Q9NTJ3 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SMC4Q9NTJ3 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms