Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RPS2P1-201ENST00000434010 821 ntBASIC19.18■□□□□ 0.66
USP28Q96RU2 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC19.18■□□□□ 0.66
USP28Q96RU2 AC091167.2-201ENST00000579581 588 ntBASIC19.18■□□□□ 0.66
USP28Q96RU2 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.18■□□□□ 0.66
USP28Q96RU2 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP28Q96RU2 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC19.18■□□□□ 0.66
USP28Q96RU2 ABR-203ENST00000536794 2213 ntTSL 2 BASIC19.18■□□□□ 0.66
USP28Q96RU2 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP28Q96RU2 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC19.18■□□□□ 0.66
USP28Q96RU2 AL139384.1-201ENST00000612143 3047 ntBASIC19.18■□□□□ 0.66
USP28Q96RU2 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC19.18■□□□□ 0.66
USP28Q96RU2 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.18■□□□□ 0.66
USP28Q96RU2 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC19.17■□□□□ 0.66
USP28Q96RU2 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP28Q96RU2 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP28Q96RU2 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
USP28Q96RU2 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP28Q96RU2 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP28Q96RU2 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
USP28Q96RU2 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC19.17■□□□□ 0.66
USP28Q96RU2 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP28Q96RU2 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC19.17■□□□□ 0.66
USP28Q96RU2 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP28Q96RU2 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP28Q96RU2 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP28Q96RU2 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP28Q96RU2 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC19.17■□□□□ 0.66
USP28Q96RU2 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.17■□□□□ 0.66
USP28Q96RU2 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
USP28Q96RU2 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
USP28Q96RU2 RPS15P9-201ENST00000494093 319 ntBASIC19.17■□□□□ 0.66
USP28Q96RU2 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP28Q96RU2 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.17■□□□□ 0.66
USP28Q96RU2 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.17■□□□□ 0.66
USP28Q96RU2 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.17■□□□□ 0.66
USP28Q96RU2 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.17■□□□□ 0.66
USP28Q96RU2 AC006557.2-201ENST00000592985 1240 ntBASIC19.17■□□□□ 0.66
USP28Q96RU2 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP28Q96RU2 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC19.17■□□□□ 0.66
USP28Q96RU2 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP28Q96RU2 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP28Q96RU2 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP28Q96RU2 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC19.17■□□□□ 0.66
USP28Q96RU2 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC19.17■□□□□ 0.66
USP28Q96RU2 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP28Q96RU2 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
USP28Q96RU2 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
USP28Q96RU2 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
USP28Q96RU2 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP28Q96RU2 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
USP28Q96RU2 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP28Q96RU2 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP28Q96RU2 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
USP28Q96RU2 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC19.16■□□□□ 0.66
USP28Q96RU2 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
USP28Q96RU2 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP28Q96RU2 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC19.16■□□□□ 0.66
USP28Q96RU2 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP28Q96RU2 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP28Q96RU2 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC19.16■□□□□ 0.66
USP28Q96RU2 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP28Q96RU2 SIGLEC29P-201ENST00000599873 1114 ntBASIC19.16■□□□□ 0.66
USP28Q96RU2 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.16■□□□□ 0.66
USP28Q96RU2 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.16■□□□□ 0.66
USP28Q96RU2 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP28Q96RU2 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC19.16■□□□□ 0.66
USP28Q96RU2 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP28Q96RU2 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP28Q96RU2 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC19.16■□□□□ 0.66
USP28Q96RU2 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP28Q96RU2 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP28Q96RU2 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP28Q96RU2 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP28Q96RU2 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC19.16■□□□□ 0.66
USP28Q96RU2 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
USP28Q96RU2 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
USP28Q96RU2 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC19.15■□□□□ 0.66
USP28Q96RU2 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.15■□□□□ 0.66
USP28Q96RU2 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP28Q96RU2 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
USP28Q96RU2 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USP28Q96RU2 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP28Q96RU2 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
USP28Q96RU2 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP28Q96RU2 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP28Q96RU2 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC19.15■□□□□ 0.66
USP28Q96RU2 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.15■□□□□ 0.66
USP28Q96RU2 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.15■□□□□ 0.66
USP28Q96RU2 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC19.15■□□□□ 0.66
USP28Q96RU2 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.15■□□□□ 0.66
USP28Q96RU2 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC19.15■□□□□ 0.66
USP28Q96RU2 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19.15■□□□□ 0.66
USP28Q96RU2 CYP2A7P1-201ENST00000595391 815 ntBASIC19.15■□□□□ 0.66
USP28Q96RU2 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP28Q96RU2 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
USP28Q96RU2 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
USP28Q96RU2 TP73-AS1-207ENST00000624167 988 ntBASIC19.15■□□□□ 0.66
USP28Q96RU2 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC19.15■□□□□ 0.66
USP28Q96RU2 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP28Q96RU2 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms