Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS39Q96JC1 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS39Q96JC1 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS39Q96JC1 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS39Q96JC1 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
VPS39Q96JC1 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
VPS39Q96JC1 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS39Q96JC1 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS39Q96JC1 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS39Q96JC1 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS39Q96JC1 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS39Q96JC1 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
VPS39Q96JC1 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS39Q96JC1 FLJ16779-201ENST00000612722 7638 ntBASIC16.84■□□□□ 0.29
VPS39Q96JC1 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
VPS39Q96JC1 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS39Q96JC1 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS39Q96JC1 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS39Q96JC1 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS39Q96JC1 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.84■□□□□ 0.29
VPS39Q96JC1 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.84■□□□□ 0.29
VPS39Q96JC1 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS39Q96JC1 AL121772.3-201ENST00000610840 674 ntBASIC16.84■□□□□ 0.29
VPS39Q96JC1 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS39Q96JC1 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
VPS39Q96JC1 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
VPS39Q96JC1 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS39Q96JC1 LINC02199-201ENST00000506655 2702 ntBASIC16.84■□□□□ 0.29
VPS39Q96JC1 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS39Q96JC1 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS39Q96JC1 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS39Q96JC1 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS39Q96JC1 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS39Q96JC1 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS39Q96JC1 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS39Q96JC1 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS39Q96JC1 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS39Q96JC1 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS39Q96JC1 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS39Q96JC1 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS39Q96JC1 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS39Q96JC1 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS39Q96JC1 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
VPS39Q96JC1 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS39Q96JC1 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.83■□□□□ 0.28
VPS39Q96JC1 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS39Q96JC1 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.83■□□□□ 0.28
VPS39Q96JC1 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS39Q96JC1 UPK3BP1-201ENST00000428678 509 ntBASIC16.83■□□□□ 0.28
VPS39Q96JC1 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
VPS39Q96JC1 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS39Q96JC1 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS39Q96JC1 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.83■□□□□ 0.28
VPS39Q96JC1 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS39Q96JC1 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.83■□□□□ 0.28
VPS39Q96JC1 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.83■□□□□ 0.28
VPS39Q96JC1 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
VPS39Q96JC1 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS39Q96JC1 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.83■□□□□ 0.28
VPS39Q96JC1 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS39Q96JC1 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS39Q96JC1 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS39Q96JC1 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS39Q96JC1 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.83■□□□□ 0.28
VPS39Q96JC1 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS39Q96JC1 AL589182.2-201ENST00000619332 1049 ntBASIC16.83■□□□□ 0.28
VPS39Q96JC1 AL139011.1-202ENST00000642063 584 ntBASIC16.83■□□□□ 0.28
VPS39Q96JC1 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS39Q96JC1 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS39Q96JC1 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
VPS39Q96JC1 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS39Q96JC1 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS39Q96JC1 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS39Q96JC1 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS39Q96JC1 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS39Q96JC1 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS39Q96JC1 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS39Q96JC1 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS39Q96JC1 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.82■□□□□ 0.28
VPS39Q96JC1 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS39Q96JC1 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS39Q96JC1 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS39Q96JC1 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS39Q96JC1 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS39Q96JC1 AC008741.2-201ENST00000612792 3115 ntBASIC16.82■□□□□ 0.28
VPS39Q96JC1 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS39Q96JC1 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
VPS39Q96JC1 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS39Q96JC1 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS39Q96JC1 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
VPS39Q96JC1 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS39Q96JC1 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS39Q96JC1 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS39Q96JC1 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS39Q96JC1 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS39Q96JC1 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
VPS39Q96JC1 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS39Q96JC1 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
VPS39Q96JC1 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS39Q96JC1 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms