Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
RTF1Q92541 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RTF1Q92541 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
RTF1Q92541 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RTF1Q92541 PC-204ENST00000524491 1714 ntTSL 2 BASIC21.8■■□□□ 1.08
RTF1Q92541 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC21.8■■□□□ 1.08
RTF1Q92541 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
RTF1Q92541 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RTF1Q92541 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RTF1Q92541 KRT8P39-201ENST00000396270 1433 ntBASIC21.8■■□□□ 1.08
RTF1Q92541 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RTF1Q92541 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RTF1Q92541 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
RTF1Q92541 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC21.79■■□□□ 1.08
RTF1Q92541 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC21.79■■□□□ 1.08
RTF1Q92541 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
RTF1Q92541 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RTF1Q92541 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RTF1Q92541 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
RTF1Q92541 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC21.79■■□□□ 1.08
RTF1Q92541 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC21.79■■□□□ 1.08
RTF1Q92541 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
RTF1Q92541 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
RTF1Q92541 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC21.79■■□□□ 1.08
RTF1Q92541 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC21.79■■□□□ 1.08
RTF1Q92541 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RTF1Q92541 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RTF1Q92541 GPS2P2-201ENST00000430745 888 ntBASIC21.79■■□□□ 1.08
RTF1Q92541 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC21.79■■□□□ 1.08
RTF1Q92541 FAM86GP-201ENST00000448322 971 ntBASIC21.79■■□□□ 1.08
RTF1Q92541 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC21.79■■□□□ 1.08
RTF1Q92541 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
RTF1Q92541 SLBP-205ENST00000488267 987 ntTSL 2 BASIC21.79■■□□□ 1.08
RTF1Q92541 SLC25A39P2-201ENST00000537614 270 ntBASIC21.79■■□□□ 1.08
RTF1Q92541 AP000842.3-202ENST00000569238 1080 ntBASIC21.79■■□□□ 1.08
RTF1Q92541 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RTF1Q92541 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
RTF1Q92541 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC21.79■■□□□ 1.08
RTF1Q92541 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
RTF1Q92541 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
RTF1Q92541 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC21.79■■□□□ 1.08
RTF1Q92541 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
RTF1Q92541 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RTF1Q92541 CEP83-AS1-201ENST00000623122 2482 ntBASIC21.79■■□□□ 1.08
RTF1Q92541 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RTF1Q92541 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC21.79■■□□□ 1.08
RTF1Q92541 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RTF1Q92541 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
RTF1Q92541 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
RTF1Q92541 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RTF1Q92541 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RTF1Q92541 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
RTF1Q92541 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC21.78■■□□□ 1.08
RTF1Q92541 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC21.78■■□□□ 1.08
RTF1Q92541 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC21.78■■□□□ 1.08
RTF1Q92541 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
RTF1Q92541 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC21.78■■□□□ 1.08
RTF1Q92541 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC21.78■■□□□ 1.08
RTF1Q92541 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC21.78■■□□□ 1.08
RTF1Q92541 AL138918.1-201ENST00000568306 659 ntBASIC21.78■■□□□ 1.08
RTF1Q92541 Z92544.3-201ENST00000624747 417 ntBASIC21.78■■□□□ 1.08
RTF1Q92541 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RTF1Q92541 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RTF1Q92541 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RTF1Q92541 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
RTF1Q92541 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RTF1Q92541 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC21.78■■□□□ 1.08
RTF1Q92541 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RTF1Q92541 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RTF1Q92541 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC21.78■■□□□ 1.08
RTF1Q92541 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RTF1Q92541 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RTF1Q92541 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
RTF1Q92541 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RTF1Q92541 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RTF1Q92541 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RTF1Q92541 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RTF1Q92541 SNX33P1-201ENST00000592116 1762 ntBASIC21.77■■□□□ 1.08
RTF1Q92541 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC21.77■■□□□ 1.08
RTF1Q92541 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
RTF1Q92541 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RTF1Q92541 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC21.77■■□□□ 1.08
RTF1Q92541 MIR346-201ENST00000362234 95 ntBASIC21.77■■□□□ 1.08
RTF1Q92541 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RTF1Q92541 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC21.77■■□□□ 1.08
RTF1Q92541 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC21.77■■□□□ 1.08
RTF1Q92541 VPS29-207ENST00000549970 818 ntTSL 3 BASIC21.77■■□□□ 1.08
RTF1Q92541 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RTF1Q92541 SSH2-211ENST00000590153 570 ntTSL 4 BASIC21.77■■□□□ 1.08
RTF1Q92541 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RTF1Q92541 AC093512.1-201ENST00000617969 520 ntBASIC21.77■■□□□ 1.08
RTF1Q92541 AP001059.3-201ENST00000619053 235 ntBASIC21.77■■□□□ 1.08
RTF1Q92541 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC21.77■■□□□ 1.08
RTF1Q92541 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC21.77■■□□□ 1.08
RTF1Q92541 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RTF1Q92541 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
RTF1Q92541 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC21.77■■□□□ 1.08
RTF1Q92541 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RTF1Q92541 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RTF1Q92541 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms