Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 INE1-201ENST00000456273 945 ntBASIC21.94■■□□□ 1.1
USP54Q70EL1 GPR53P-205ENST00000457298 1084 ntBASIC21.94■■□□□ 1.1
USP54Q70EL1 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
USP54Q70EL1 TPRX2P-201ENST00000535362 881 ntBASIC21.94■■□□□ 1.1
USP54Q70EL1 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC21.94■■□□□ 1.1
USP54Q70EL1 MIR6752-201ENST00000618442 71 ntBASIC21.94■■□□□ 1.1
USP54Q70EL1 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC21.94■■□□□ 1.1
USP54Q70EL1 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
USP54Q70EL1 AL136982.4-201ENST00000437689 1740 ntBASIC21.94■■□□□ 1.1
USP54Q70EL1 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
USP54Q70EL1 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
USP54Q70EL1 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
USP54Q70EL1 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
USP54Q70EL1 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
USP54Q70EL1 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC21.94■■□□□ 1.1
USP54Q70EL1 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
USP54Q70EL1 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.94■■□□□ 1.1
USP54Q70EL1 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
USP54Q70EL1 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
USP54Q70EL1 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC21.93■■□□□ 1.1
USP54Q70EL1 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
USP54Q70EL1 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
USP54Q70EL1 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
USP54Q70EL1 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
USP54Q70EL1 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
USP54Q70EL1 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
USP54Q70EL1 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
USP54Q70EL1 AC098614.1-201ENST00000368528 745 ntBASIC21.93■■□□□ 1.1
USP54Q70EL1 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
USP54Q70EL1 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
USP54Q70EL1 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC21.93■■□□□ 1.1
USP54Q70EL1 MIR1909-201ENST00000411312 80 ntBASIC21.93■■□□□ 1.1
USP54Q70EL1 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
USP54Q70EL1 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC21.93■■□□□ 1.1
USP54Q70EL1 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC21.93■■□□□ 1.1
USP54Q70EL1 IFT20-216ENST00000588477 774 ntTSL 5 BASIC21.93■■□□□ 1.1
USP54Q70EL1 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
USP54Q70EL1 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
USP54Q70EL1 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC21.93■■□□□ 1.1
USP54Q70EL1 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
USP54Q70EL1 AL645608.8-201ENST00000606034 2086 ntBASIC21.93■■□□□ 1.1
USP54Q70EL1 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC21.93■■□□□ 1.1
USP54Q70EL1 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
USP54Q70EL1 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
USP54Q70EL1 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC21.93■■□□□ 1.1
USP54Q70EL1 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
USP54Q70EL1 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC21.92■■□□□ 1.1
USP54Q70EL1 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
USP54Q70EL1 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
USP54Q70EL1 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC21.92■■□□□ 1.1
USP54Q70EL1 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC21.92■■□□□ 1.1
USP54Q70EL1 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
USP54Q70EL1 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC21.92■■□□□ 1.1
USP54Q70EL1 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
USP54Q70EL1 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
USP54Q70EL1 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC21.92■■□□□ 1.1
USP54Q70EL1 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
USP54Q70EL1 AL512384.1-201ENST00000406683 331 ntBASIC21.92■■□□□ 1.1
USP54Q70EL1 ELK1P1-201ENST00000485699 580 ntBASIC21.92■■□□□ 1.1
USP54Q70EL1 USP32P1-208ENST00000506594 1164 ntBASIC21.92■■□□□ 1.1
USP54Q70EL1 BANP-227ENST00000626016 2144 ntTSL 2 BASIC21.92■■□□□ 1.1
USP54Q70EL1 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
USP54Q70EL1 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
USP54Q70EL1 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC21.92■■□□□ 1.1
USP54Q70EL1 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC21.92■■□□□ 1.1
USP54Q70EL1 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC21.92■■□□□ 1.1
USP54Q70EL1 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
USP54Q70EL1 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
USP54Q70EL1 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
USP54Q70EL1 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
USP54Q70EL1 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
USP54Q70EL1 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC21.92■■□□□ 1.1
USP54Q70EL1 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.92■■□□□ 1.1
USP54Q70EL1 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
USP54Q70EL1 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC21.92■■□□□ 1.1
USP54Q70EL1 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
USP54Q70EL1 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC21.91■■□□□ 1.1
USP54Q70EL1 PTPA-220ENST00000436883 532 ntTSL 4 BASIC21.91■■□□□ 1.1
USP54Q70EL1 AL139010.1-201ENST00000454878 894 ntBASIC21.91■■□□□ 1.1
USP54Q70EL1 CD81-207ENST00000481687 890 ntTSL 2 BASIC21.91■■□□□ 1.1
USP54Q70EL1 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC21.91■■□□□ 1.1
USP54Q70EL1 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC21.91■■□□□ 1.1
USP54Q70EL1 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC21.91■■□□□ 1.1
USP54Q70EL1 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC21.91■■□□□ 1.1
USP54Q70EL1 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
USP54Q70EL1 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
USP54Q70EL1 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
USP54Q70EL1 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC21.91■■□□□ 1.1
USP54Q70EL1 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
USP54Q70EL1 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC21.91■■□□□ 1.1
USP54Q70EL1 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC21.91■■□□□ 1.1
USP54Q70EL1 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC21.91■■□□□ 1.1
USP54Q70EL1 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
USP54Q70EL1 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC21.91■■□□□ 1.1
USP54Q70EL1 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC21.91■■□□□ 1.1
USP54Q70EL1 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC21.91■■□□□ 1.1
USP54Q70EL1 AC106886.1-201ENST00000568660 600 ntBASIC21.91■■□□□ 1.1
USP54Q70EL1 APOC4-201ENST00000591600 348 ntTSL 3 BASIC21.91■■□□□ 1.1
USP54Q70EL1 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
USP54Q70EL1 Z97205.2-201ENST00000564697 1639 ntBASIC21.91■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms