Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 KRT18P2-201ENST00000447938 1258 ntBASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 IGHV3-65-201ENST00000523210 341 ntBASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 AC004790.2-201ENST00000623588 572 ntBASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 AC006277.1-201ENST00000624348 1610 ntBASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.22
PTCHD3Q3KNS1 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.22
PTCHD3Q3KNS1 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 CRYGEP-201ENST00000412192 528 ntBASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 AC013467.2-201ENST00000605472 835 ntBASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 CROCCP1-201ENST00000426910 5675 ntBASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTCHD3Q3KNS1 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 AC046158.3-201ENST00000624947 2558 ntBASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 YBX2P1-201ENST00000394192 760 ntBASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
PTCHD3Q3KNS1 AC107918.2-201ENST00000530817 355 ntBASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms