Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC19.42■□□□□ 0.7
SHROOM1Q2M3G4 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 AL023806.1-201ENST00000603994 1649 ntBASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 GOLGA6L11P-201ENST00000417252 1298 ntBASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 WDR53-204ENST00000433160 887 ntTSL 5 BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 AC241585.1-201ENST00000433527 519 ntBASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 AC239800.4-201ENST00000603712 296 ntBASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 AC007967.4-201ENST00000614700 386 ntBASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHROOM1Q2M3G4 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 GCK-202ENST00000345378 2421 ntTSL 2 BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 AP005018.1-201ENST00000525475 301 ntBASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SHROOM1Q2M3G4 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SHROOM1Q2M3G4 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SHROOM1Q2M3G4 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC19.39■□□□□ 0.7
SHROOM1Q2M3G4 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 COPE-202ENST00000349893 948 ntTSL 2 BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 PP14571-201ENST00000404327 934 ntTSL 2 BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 AL512638.1-201ENST00000457493 794 ntBASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 RBM7-207ENST00000544582 692 ntTSL 3 BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC19.39■□□□□ 0.69
SHROOM1Q2M3G4 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC19.38■□□□□ 0.69
SHROOM1Q2M3G4 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SHROOM1Q2M3G4 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHROOM1Q2M3G4 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms