Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 GRN-222ENST00000639447 1314 ntTSL 2 BASIC11.87□□□□□ -0.51
PRKDCP78527 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC11.87□□□□□ -0.51
PRKDCP78527 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
PRKDCP78527 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
PRKDCP78527 AL359711.2-201ENST00000563105 872 ntBASIC11.87□□□□□ -0.51
PRKDCP78527 AC124283.3-201ENST00000570869 594 ntBASIC11.87□□□□□ -0.51
PRKDCP78527 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC11.87□□□□□ -0.51
PRKDCP78527 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC11.87□□□□□ -0.51
PRKDCP78527 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
PRKDCP78527 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
PRKDCP78527 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
PRKDCP78527 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC11.87□□□□□ -0.51
PRKDCP78527 SPTLC1P5-201ENST00000450718 252 ntBASIC11.87□□□□□ -0.51
PRKDCP78527 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC11.87□□□□□ -0.51
PRKDCP78527 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC11.87□□□□□ -0.51
PRKDCP78527 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC11.87□□□□□ -0.51
PRKDCP78527 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
PRKDCP78527 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
PRKDCP78527 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC11.87□□□□□ -0.51
PRKDCP78527 NDUFV2P1-201ENST00000596415 907 ntBASIC11.87□□□□□ -0.51
PRKDCP78527 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC11.87□□□□□ -0.51
PRKDCP78527 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC11.87□□□□□ -0.51
PRKDCP78527 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC11.86□□□□□ -0.51
PRKDCP78527 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
PRKDCP78527 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC11.86□□□□□ -0.51
PRKDCP78527 MIR4492-201ENST00000581627 80 ntBASIC11.86□□□□□ -0.51
PRKDCP78527 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC11.86□□□□□ -0.51
PRKDCP78527 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC11.86□□□□□ -0.51
PRKDCP78527 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
PRKDCP78527 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 AC016700.1-201ENST00000429424 312 ntBASIC11.86□□□□□ -0.51
PRKDCP78527 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 TIMM17BP1-201ENST00000545713 516 ntBASIC11.86□□□□□ -0.51
PRKDCP78527 QPRT-203ENST00000562473 579 ntTSL 3 BASIC11.86□□□□□ -0.51
PRKDCP78527 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC11.86□□□□□ -0.51
PRKDCP78527 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC11.86□□□□□ -0.51
PRKDCP78527 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC11.86□□□□□ -0.51
PRKDCP78527 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
PRKDCP78527 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC11.86□□□□□ -0.51
PRKDCP78527 STARD13-205ENST00000439831 945 ntTSL 2 BASIC11.86□□□□□ -0.51
PRKDCP78527 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 PTP4A1P2-201ENST00000546033 454 ntBASIC11.86□□□□□ -0.51
PRKDCP78527 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC11.86□□□□□ -0.51
PRKDCP78527 USE1-206ENST00000595101 1776 ntTSL 2 BASIC11.86□□□□□ -0.51
PRKDCP78527 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC11.86□□□□□ -0.51
PRKDCP78527 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
PRKDCP78527 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PRKDCP78527 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
PRKDCP78527 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
PRKDCP78527 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
PRKDCP78527 FRMD8P1-201ENST00000440433 1524 ntBASIC11.85□□□□□ -0.51
PRKDCP78527 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PRKDCP78527 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PRKDCP78527 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
PRKDCP78527 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC11.85□□□□□ -0.51
PRKDCP78527 HNRNPA1P13-201ENST00000510646 963 ntBASIC11.85□□□□□ -0.51
PRKDCP78527 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC11.85□□□□□ -0.51
PRKDCP78527 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC11.85□□□□□ -0.51
PRKDCP78527 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
PRKDCP78527 PRKXP1-201ENST00000561423 1122 ntBASIC11.85□□□□□ -0.51
PRKDCP78527 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
PRKDCP78527 AC091812.3-201ENST00000621362 345 ntBASIC11.85□□□□□ -0.51
PRKDCP78527 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PRKDCP78527 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC11.85□□□□□ -0.51
PRKDCP78527 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
PRKDCP78527 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC11.85□□□□□ -0.51
PRKDCP78527 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PRKDCP78527 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC11.85□□□□□ -0.51
PRKDCP78527 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC11.85□□□□□ -0.51
PRKDCP78527 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PRKDCP78527 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
PRKDCP78527 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PRKDCP78527 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
PRKDCP78527 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC11.85□□□□□ -0.51
PRKDCP78527 HIST3H2BA-201ENST00000436555 524 ntBASIC11.85□□□□□ -0.51
PRKDCP78527 MAGEA5-201ENST00000446757 942 ntBASIC11.85□□□□□ -0.51
PRKDCP78527 RN7SL399P-201ENST00000471648 279 ntBASIC11.85□□□□□ -0.51
PRKDCP78527 RPL8-205ENST00000527914 551 ntTSL 3 BASIC11.85□□□□□ -0.51
PRKDCP78527 AP001505.2-201ENST00000616815 443 ntBASIC11.85□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms