Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 RNU1-129P-201ENST00000384064 167 ntBASIC16.53■□□□□ 0.24
SRP54P61011 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.53■□□□□ 0.24
SRP54P61011 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 AL627223.1-201ENST00000416693 442 ntBASIC16.53■□□□□ 0.24
SRP54P61011 HMGN1P19-201ENST00000436976 333 ntBASIC16.53■□□□□ 0.24
SRP54P61011 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.53■□□□□ 0.24
SRP54P61011 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.53■□□□□ 0.24
SRP54P61011 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.53■□□□□ 0.24
SRP54P61011 AC124947.2-201ENST00000547118 1133 ntBASIC16.53■□□□□ 0.24
SRP54P61011 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.53■□□□□ 0.24
SRP54P61011 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.53■□□□□ 0.24
SRP54P61011 U1.21-201ENST00000580816 167 ntBASIC16.53■□□□□ 0.24
SRP54P61011 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.53■□□□□ 0.24
SRP54P61011 AL031055.1-201ENST00000606362 631 ntBASIC16.53■□□□□ 0.24
SRP54P61011 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.53■□□□□ 0.24
SRP54P61011 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.53■□□□□ 0.24
SRP54P61011 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SRP54P61011 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
SRP54P61011 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.53■□□□□ 0.24
SRP54P61011 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SRP54P61011 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
SRP54P61011 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SRP54P61011 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
SRP54P61011 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SRP54P61011 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.52■□□□□ 0.24
SRP54P61011 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
SRP54P61011 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.52■□□□□ 0.24
SRP54P61011 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
SRP54P61011 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
SRP54P61011 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.52■□□□□ 0.24
SRP54P61011 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
SRP54P61011 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SRP54P61011 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SRP54P61011 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
SRP54P61011 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SRP54P61011 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SRP54P61011 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
SRP54P61011 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SRP54P61011 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.52■□□□□ 0.24
SRP54P61011 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.52■□□□□ 0.24
SRP54P61011 CYMP-203ENST00000474680 1263 ntBASIC16.52■□□□□ 0.24
SRP54P61011 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.52■□□□□ 0.24
SRP54P61011 HLA-J-203ENST00000494367 1087 ntBASIC16.52■□□□□ 0.24
SRP54P61011 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.52■□□□□ 0.24
SRP54P61011 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.52■□□□□ 0.24
SRP54P61011 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
SRP54P61011 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SRP54P61011 AC093520.2-201ENST00000561830 333 ntBASIC16.52■□□□□ 0.24
SRP54P61011 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
SRP54P61011 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.52■□□□□ 0.24
SRP54P61011 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.52■□□□□ 0.24
SRP54P61011 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SRP54P61011 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SRP54P61011 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SRP54P61011 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.52■□□□□ 0.23
SRP54P61011 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.52■□□□□ 0.23
SRP54P61011 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.52■□□□□ 0.23
SRP54P61011 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SRP54P61011 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.52■□□□□ 0.23
SRP54P61011 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
SRP54P61011 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SRP54P61011 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
SRP54P61011 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SRP54P61011 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SRP54P61011 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.52■□□□□ 0.23
SRP54P61011 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.52■□□□□ 0.23
SRP54P61011 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.52■□□□□ 0.23
SRP54P61011 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.23
SRP54P61011 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SRP54P61011 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.52■□□□□ 0.23
SRP54P61011 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
SRP54P61011 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.51■□□□□ 0.23
SRP54P61011 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SRP54P61011 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SRP54P61011 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
SRP54P61011 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SRP54P61011 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SRP54P61011 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SRP54P61011 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SRP54P61011 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SRP54P61011 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
SRP54P61011 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SRP54P61011 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.51■□□□□ 0.23
SRP54P61011 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms