Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
MRE11P49959 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
MRE11P49959 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC19.61■□□□□ 0.73
MRE11P49959 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.61■□□□□ 0.73
MRE11P49959 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
MRE11P49959 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC19.61■□□□□ 0.73
MRE11P49959 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
MRE11P49959 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC19.61■□□□□ 0.73
MRE11P49959 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MRE11P49959 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MRE11P49959 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
MRE11P49959 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MRE11P49959 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC19.61■□□□□ 0.73
MRE11P49959 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MRE11P49959 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
MRE11P49959 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
MRE11P49959 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MRE11P49959 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MRE11P49959 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MRE11P49959 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
MRE11P49959 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MRE11P49959 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC19.6■□□□□ 0.73
MRE11P49959 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MRE11P49959 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MRE11P49959 AL603832.2-201ENST00000566195 2125 ntBASIC19.6■□□□□ 0.73
MRE11P49959 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
MRE11P49959 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MRE11P49959 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC19.6■□□□□ 0.73
MRE11P49959 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
MRE11P49959 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC19.6■□□□□ 0.73
MRE11P49959 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.6■□□□□ 0.73
MRE11P49959 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.6■□□□□ 0.73
MRE11P49959 AC027796.2-201ENST00000575326 344 ntBASIC19.6■□□□□ 0.73
MRE11P49959 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MRE11P49959 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
MRE11P49959 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.6■□□□□ 0.73
MRE11P49959 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
MRE11P49959 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MRE11P49959 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MRE11P49959 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MRE11P49959 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
MRE11P49959 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MRE11P49959 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MRE11P49959 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC19.6■□□□□ 0.73
MRE11P49959 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MRE11P49959 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
MRE11P49959 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
MRE11P49959 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC19.59■□□□□ 0.73
MRE11P49959 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
MRE11P49959 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC19.59■□□□□ 0.73
MRE11P49959 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MRE11P49959 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
MRE11P49959 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MRE11P49959 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
MRE11P49959 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC19.59■□□□□ 0.73
MRE11P49959 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
MRE11P49959 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MRE11P49959 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MRE11P49959 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
MRE11P49959 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
MRE11P49959 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.59■□□□□ 0.73
MRE11P49959 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MRE11P49959 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MRE11P49959 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.59■□□□□ 0.73
MRE11P49959 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
MRE11P49959 PMS2P2-201ENST00000425039 1128 ntBASIC19.59■□□□□ 0.73
MRE11P49959 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.59■□□□□ 0.73
MRE11P49959 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.59■□□□□ 0.73
MRE11P49959 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC19.59■□□□□ 0.73
MRE11P49959 PENK-208ENST00000523051 772 ntTSL 5 BASIC19.59■□□□□ 0.73
MRE11P49959 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MRE11P49959 AL732292.2-201ENST00000609649 430 ntBASIC19.59■□□□□ 0.73
MRE11P49959 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MRE11P49959 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC19.59■□□□□ 0.73
MRE11P49959 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC19.59■□□□□ 0.73
MRE11P49959 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
MRE11P49959 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MRE11P49959 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
MRE11P49959 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MRE11P49959 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC19.59■□□□□ 0.73
MRE11P49959 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
MRE11P49959 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
MRE11P49959 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
MRE11P49959 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
MRE11P49959 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
MRE11P49959 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
MRE11P49959 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
MRE11P49959 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.58■□□□□ 0.73
MRE11P49959 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
MRE11P49959 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
MRE11P49959 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
MRE11P49959 MRPL3P1-201ENST00000400109 1033 ntBASIC19.58■□□□□ 0.72
MRE11P49959 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.58■□□□□ 0.72
MRE11P49959 AP000692.2-201ENST00000608391 879 ntBASIC19.58■□□□□ 0.72
MRE11P49959 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
MRE11P49959 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC19.58■□□□□ 0.72
MRE11P49959 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC19.58■□□□□ 0.72
MRE11P49959 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC19.58■□□□□ 0.72
MRE11P49959 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
MRE11P49959 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms