Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
LIG3P49916 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIG3P49916 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIG3P49916 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIG3P49916 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.71■□□□□ 0.43
LIG3P49916 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.71■□□□□ 0.43
LIG3P49916 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIG3P49916 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIG3P49916 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIG3P49916 AC104640.1-201ENST00000562617 2109 ntBASIC17.71■□□□□ 0.43
LIG3P49916 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
LIG3P49916 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.71■□□□□ 0.43
LIG3P49916 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIG3P49916 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIG3P49916 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIG3P49916 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIG3P49916 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.71■□□□□ 0.43
LIG3P49916 COX5BP2-201ENST00000392354 334 ntBASIC17.71■□□□□ 0.43
LIG3P49916 ABCD1P5-201ENST00000445663 754 ntBASIC17.71■□□□□ 0.43
LIG3P49916 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.71■□□□□ 0.43
LIG3P49916 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.71■□□□□ 0.43
LIG3P49916 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.71■□□□□ 0.43
LIG3P49916 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.71■□□□□ 0.43
LIG3P49916 AC106795.1-205ENST00000512851 1056 ntBASIC17.71■□□□□ 0.43
LIG3P49916 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIG3P49916 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIG3P49916 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.71■□□□□ 0.43
LIG3P49916 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.71■□□□□ 0.43
LIG3P49916 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
LIG3P49916 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIG3P49916 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
LIG3P49916 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIG3P49916 PKD1P5-201ENST00000532415 10291 ntBASIC17.71■□□□□ 0.43
LIG3P49916 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.71■□□□□ 0.43
LIG3P49916 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIG3P49916 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIG3P49916 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.71■□□□□ 0.43
LIG3P49916 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIG3P49916 KRT8P10-201ENST00000450021 1447 ntBASIC17.71■□□□□ 0.43
LIG3P49916 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIG3P49916 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIG3P49916 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.42
LIG3P49916 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.42
LIG3P49916 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
LIG3P49916 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.71■□□□□ 0.42
LIG3P49916 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIG3P49916 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIG3P49916 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIG3P49916 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LIG3P49916 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIG3P49916 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIG3P49916 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIG3P49916 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LIG3P49916 AC092171.3-201ENST00000610122 2651 ntBASIC17.7■□□□□ 0.42
LIG3P49916 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
LIG3P49916 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.7■□□□□ 0.42
LIG3P49916 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC17.7■□□□□ 0.42
LIG3P49916 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIG3P49916 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIG3P49916 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.7■□□□□ 0.42
LIG3P49916 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIG3P49916 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIG3P49916 RBM17P3-201ENST00000417687 1192 ntBASIC17.7■□□□□ 0.42
LIG3P49916 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.7■□□□□ 0.42
LIG3P49916 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.7■□□□□ 0.42
LIG3P49916 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIG3P49916 AC009078.2-202ENST00000463353 338 ntBASIC17.7■□□□□ 0.42
LIG3P49916 AC122714.2-201ENST00000502787 707 ntBASIC17.7■□□□□ 0.42
LIG3P49916 AP002469.2-201ENST00000531724 424 ntBASIC17.7■□□□□ 0.42
LIG3P49916 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.7■□□□□ 0.42
LIG3P49916 MTDHP3-201ENST00000594186 672 ntBASIC17.7■□□□□ 0.42
LIG3P49916 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.7■□□□□ 0.42
LIG3P49916 AL355877.3-201ENST00000622820 899 ntBASIC17.7■□□□□ 0.42
LIG3P49916 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIG3P49916 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIG3P49916 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIG3P49916 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIG3P49916 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIG3P49916 AP005117.1-201ENST00000584346 1413 ntBASIC17.7■□□□□ 0.42
LIG3P49916 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LIG3P49916 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
LIG3P49916 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC17.7■□□□□ 0.42
LIG3P49916 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.7■□□□□ 0.42
LIG3P49916 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIG3P49916 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.7■□□□□ 0.42
LIG3P49916 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIG3P49916 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIG3P49916 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
LIG3P49916 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.69■□□□□ 0.42
LIG3P49916 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.69■□□□□ 0.42
LIG3P49916 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
LIG3P49916 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC17.69■□□□□ 0.42
LIG3P49916 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
LIG3P49916 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
LIG3P49916 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIG3P49916 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.69■□□□□ 0.42
LIG3P49916 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms