Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CR1P49238 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.78□□□□□ -0.04
CX3CR1P49238 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CR1P49238 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CR1P49238 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CR1P49238 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CR1P49238 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CX3CR1P49238 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC14.78□□□□□ -0.04
CX3CR1P49238 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC14.78□□□□□ -0.04
CX3CR1P49238 AMT-206ENST00000458307 1860 ntTSL 2 BASIC14.78□□□□□ -0.04
CX3CR1P49238 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CX3CR1P49238 PCDHA1-201ENST00000378133 2726 ntBASIC14.78□□□□□ -0.04
CX3CR1P49238 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
CX3CR1P49238 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.77□□□□□ -0.04
CX3CR1P49238 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CX3CR1P49238 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.77□□□□□ -0.04
CX3CR1P49238 ABR-203ENST00000536794 2213 ntTSL 2 BASIC14.77□□□□□ -0.04
CX3CR1P49238 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CX3CR1P49238 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC14.77□□□□□ -0.04
CX3CR1P49238 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CX3CR1P49238 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CX3CR1P49238 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CX3CR1P49238 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CX3CR1P49238 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC14.77□□□□□ -0.04
CX3CR1P49238 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CX3CR1P49238 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.77□□□□□ -0.04
CX3CR1P49238 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.04
CX3CR1P49238 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CX3CR1P49238 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CX3CR1P49238 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CX3CR1P49238 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC14.77□□□□□ -0.05
CX3CR1P49238 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CX3CR1P49238 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC14.77□□□□□ -0.05
CX3CR1P49238 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC14.77□□□□□ -0.05
CX3CR1P49238 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC14.77□□□□□ -0.05
CX3CR1P49238 SKP2-204ENST00000508514 821 ntTSL 3 BASIC14.77□□□□□ -0.05
CX3CR1P49238 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
CX3CR1P49238 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CX3CR1P49238 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC14.77□□□□□ -0.05
CX3CR1P49238 METTL23-204ENST00000586752 904 ntTSL 2 BASIC14.77□□□□□ -0.05
CX3CR1P49238 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC14.77□□□□□ -0.05
CX3CR1P49238 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CX3CR1P49238 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CX3CR1P49238 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.05
CX3CR1P49238 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CX3CR1P49238 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CX3CR1P49238 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
CX3CR1P49238 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CX3CR1P49238 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
CX3CR1P49238 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CX3CR1P49238 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.77□□□□□ -0.05
CX3CR1P49238 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
CX3CR1P49238 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CX3CR1P49238 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CX3CR1P49238 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CX3CR1P49238 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CX3CR1P49238 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CX3CR1P49238 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC14.76□□□□□ -0.05
CX3CR1P49238 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CX3CR1P49238 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CX3CR1P49238 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.76□□□□□ -0.05
CX3CR1P49238 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CX3CR1P49238 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CX3CR1P49238 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CX3CR1P49238 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC14.76□□□□□ -0.05
CX3CR1P49238 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CX3CR1P49238 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
CX3CR1P49238 PC-204ENST00000524491 1714 ntTSL 2 BASIC14.76□□□□□ -0.05
CX3CR1P49238 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CX3CR1P49238 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CX3CR1P49238 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC14.76□□□□□ -0.05
CX3CR1P49238 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CX3CR1P49238 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CX3CR1P49238 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC14.76□□□□□ -0.05
CX3CR1P49238 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC14.76□□□□□ -0.05
CX3CR1P49238 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC14.76□□□□□ -0.05
CX3CR1P49238 SAPCD2P3-201ENST00000455031 850 ntBASIC14.76□□□□□ -0.05
CX3CR1P49238 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CX3CR1P49238 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC14.76□□□□□ -0.05
CX3CR1P49238 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC14.76□□□□□ -0.05
CX3CR1P49238 IRF8-202ENST00000562492 946 ntTSL 3 BASIC14.76□□□□□ -0.05
CX3CR1P49238 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC14.76□□□□□ -0.05
CX3CR1P49238 AC004706.3-202ENST00000621574 984 ntBASIC14.76□□□□□ -0.05
CX3CR1P49238 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC14.76□□□□□ -0.05
CX3CR1P49238 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CX3CR1P49238 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CX3CR1P49238 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CX3CR1P49238 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CX3CR1P49238 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.76□□□□□ -0.05
CX3CR1P49238 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CX3CR1P49238 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CX3CR1P49238 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CX3CR1P49238 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CX3CR1P49238 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
CX3CR1P49238 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.76□□□□□ -0.05
CX3CR1P49238 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
CX3CR1P49238 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
CX3CR1P49238 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CX3CR1P49238 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
CX3CR1P49238 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms