Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.44■□□□□ 0.22
SHMT2P34897 AC107918.2-201ENST00000530817 355 ntBASIC16.44■□□□□ 0.22
SHMT2P34897 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.44■□□□□ 0.22
SHMT2P34897 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.44■□□□□ 0.22
SHMT2P34897 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.44■□□□□ 0.22
SHMT2P34897 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.44■□□□□ 0.22
SHMT2P34897 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.44■□□□□ 0.22
SHMT2P34897 REXO1L3P-201ENST00000622202 1288 ntBASIC16.44■□□□□ 0.22
SHMT2P34897 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.44■□□□□ 0.22
SHMT2P34897 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
SHMT2P34897 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.44■□□□□ 0.22
SHMT2P34897 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.44■□□□□ 0.22
SHMT2P34897 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 TUBB8P12-201ENST00000308911 1335 ntBASIC16.44■□□□□ 0.22
SHMT2P34897 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SHMT2P34897 TUBB7P-202ENST00000428444 1305 ntBASIC16.44■□□□□ 0.22
SHMT2P34897 TUBB8P7-204ENST00000567960 1332 ntBASIC16.44■□□□□ 0.22
SHMT2P34897 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHMT2P34897 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.43■□□□□ 0.22
SHMT2P34897 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHMT2P34897 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
SHMT2P34897 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHMT2P34897 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHMT2P34897 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHMT2P34897 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHMT2P34897 TOP3BP1-201ENST00000420768 1380 ntBASIC16.43■□□□□ 0.22
SHMT2P34897 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
SHMT2P34897 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHMT2P34897 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SHMT2P34897 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SHMT2P34897 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHMT2P34897 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
SHMT2P34897 KRT18P2-201ENST00000447938 1258 ntBASIC16.43■□□□□ 0.22
SHMT2P34897 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.43■□□□□ 0.22
SHMT2P34897 PGAM5P1-201ENST00000518923 814 ntBASIC16.43■□□□□ 0.22
SHMT2P34897 MAL2-202ENST00000531508 892 ntTSL 3 BASIC16.43■□□□□ 0.22
SHMT2P34897 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.43■□□□□ 0.22
SHMT2P34897 DUX4L17-201ENST00000557360 1267 ntBASIC16.43■□□□□ 0.22
SHMT2P34897 AC005412.3-201ENST00000580309 715 ntBASIC16.43■□□□□ 0.22
SHMT2P34897 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
SHMT2P34897 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.43■□□□□ 0.22
SHMT2P34897 AC007064.4-201ENST00000637740 555 ntBASIC16.43■□□□□ 0.22
SHMT2P34897 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.43■□□□□ 0.22
SHMT2P34897 AL596257.1-201ENST00000641463 2694 ntBASIC16.43■□□□□ 0.22
SHMT2P34897 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHMT2P34897 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHMT2P34897 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHMT2P34897 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHMT2P34897 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SHMT2P34897 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SHMT2P34897 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHMT2P34897 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
SHMT2P34897 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHMT2P34897 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
SHMT2P34897 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.43■□□□□ 0.22
SHMT2P34897 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHMT2P34897 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHMT2P34897 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.42■□□□□ 0.22
SHMT2P34897 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHMT2P34897 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHMT2P34897 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHMT2P34897 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.42■□□□□ 0.22
SHMT2P34897 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
SHMT2P34897 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHMT2P34897 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.42■□□□□ 0.22
SHMT2P34897 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHMT2P34897 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHMT2P34897 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHMT2P34897 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
SHMT2P34897 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHMT2P34897 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHMT2P34897 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHMT2P34897 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHMT2P34897 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.42■□□□□ 0.22
SHMT2P34897 RHOQP3-201ENST00000437982 621 ntBASIC16.42■□□□□ 0.22
SHMT2P34897 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.42■□□□□ 0.22
SHMT2P34897 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
SHMT2P34897 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.42■□□□□ 0.22
SHMT2P34897 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.42■□□□□ 0.22
SHMT2P34897 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
SHMT2P34897 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.42■□□□□ 0.22
SHMT2P34897 AC018845.2-201ENST00000568326 409 ntBASIC16.42■□□□□ 0.22
SHMT2P34897 AC002347.1-201ENST00000569543 541 ntBASIC16.42■□□□□ 0.22
SHMT2P34897 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHMT2P34897 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.42■□□□□ 0.22
SHMT2P34897 AC023141.13-201ENST00000604991 943 ntBASIC16.42■□□□□ 0.22
SHMT2P34897 ACTL9-202ENST00000612068 1252 ntBASIC16.42■□□□□ 0.22
SHMT2P34897 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.42■□□□□ 0.22
SHMT2P34897 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHMT2P34897 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.42■□□□□ 0.22
SHMT2P34897 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHMT2P34897 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHMT2P34897 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms