Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SIX3O95343 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX3O95343 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX3O95343 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX3O95343 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.42■□□□□ 0.22
SIX3O95343 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.42■□□□□ 0.22
SIX3O95343 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.42■□□□□ 0.22
SIX3O95343 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.42■□□□□ 0.22
SIX3O95343 AL139011.1-202ENST00000642063 584 ntBASIC16.42■□□□□ 0.22
SIX3O95343 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.42■□□□□ 0.22
SIX3O95343 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX3O95343 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX3O95343 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX3O95343 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.42■□□□□ 0.22
SIX3O95343 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.42■□□□□ 0.22
SIX3O95343 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.42■□□□□ 0.22
SIX3O95343 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.42■□□□□ 0.22
SIX3O95343 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX3O95343 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX3O95343 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX3O95343 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
SIX3O95343 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX3O95343 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
SIX3O95343 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
SIX3O95343 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.41■□□□□ 0.22
SIX3O95343 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.41■□□□□ 0.22
SIX3O95343 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
SIX3O95343 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.41■□□□□ 0.22
SIX3O95343 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.41■□□□□ 0.22
SIX3O95343 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.41■□□□□ 0.22
SIX3O95343 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.41■□□□□ 0.22
SIX3O95343 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.41■□□□□ 0.22
SIX3O95343 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
SIX3O95343 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.41■□□□□ 0.22
SIX3O95343 REXO1L3P-201ENST00000622202 1288 ntBASIC16.41■□□□□ 0.22
SIX3O95343 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.41■□□□□ 0.22
SIX3O95343 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
SIX3O95343 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.41■□□□□ 0.22
SIX3O95343 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
SIX3O95343 AL513523.2-202ENST00000427283 2040 ntBASIC16.41■□□□□ 0.22
SIX3O95343 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
SIX3O95343 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SIX3O95343 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.41■□□□□ 0.22
SIX3O95343 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX3O95343 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX3O95343 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX3O95343 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX3O95343 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX3O95343 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX3O95343 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SIX3O95343 AL512652.2-201ENST00000625156 1716 ntBASIC16.4■□□□□ 0.22
SIX3O95343 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX3O95343 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX3O95343 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
SIX3O95343 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX3O95343 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.4■□□□□ 0.22
SIX3O95343 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX3O95343 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SIX3O95343 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.4■□□□□ 0.22
SIX3O95343 SAPCD2P3-201ENST00000455031 850 ntBASIC16.4■□□□□ 0.22
SIX3O95343 SCARNA2-201ENST00000458748 420 ntBASIC16.4■□□□□ 0.22
SIX3O95343 SLC25A6P2-201ENST00000497974 877 ntBASIC16.4■□□□□ 0.22
SIX3O95343 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.4■□□□□ 0.22
SIX3O95343 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.4■□□□□ 0.22
SIX3O95343 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX3O95343 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.4■□□□□ 0.22
SIX3O95343 MPDU1-223ENST00000582151 728 ntBASIC16.4■□□□□ 0.22
SIX3O95343 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.4■□□□□ 0.22
SIX3O95343 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.4■□□□□ 0.22
SIX3O95343 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
SIX3O95343 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX3O95343 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SIX3O95343 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.4■□□□□ 0.22
SIX3O95343 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SIX3O95343 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX3O95343 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.4■□□□□ 0.22
SIX3O95343 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX3O95343 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.4■□□□□ 0.22
SIX3O95343 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms