Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SHOX2O60902 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
SHOX2O60902 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SHOX2O60902 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SHOX2O60902 LINC00552-201ENST00000625151 2579 ntBASIC16.81■□□□□ 0.28
SHOX2O60902 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SHOX2O60902 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHOX2O60902 AL390755.1-201ENST00000623716 2027 ntBASIC16.8■□□□□ 0.28
SHOX2O60902 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
SHOX2O60902 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHOX2O60902 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHOX2O60902 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHOX2O60902 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHOX2O60902 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
SHOX2O60902 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHOX2O60902 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
SHOX2O60902 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHOX2O60902 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
SHOX2O60902 AC139749.1-202ENST00000617529 3139 ntBASIC16.8■□□□□ 0.28
SHOX2O60902 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHOX2O60902 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHOX2O60902 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
SHOX2O60902 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
SHOX2O60902 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
SHOX2O60902 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.8■□□□□ 0.28
SHOX2O60902 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SHOX2O60902 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC16.8■□□□□ 0.28
SHOX2O60902 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SHOX2O60902 HIST1H2APS4-201ENST00000362070 348 ntBASIC16.8■□□□□ 0.28
SHOX2O60902 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHOX2O60902 GCSHP5-201ENST00000443090 522 ntBASIC16.8■□□□□ 0.28
SHOX2O60902 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
SHOX2O60902 UBE2SP1-201ENST00000450587 669 ntBASIC16.8■□□□□ 0.28
SHOX2O60902 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SHOX2O60902 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHOX2O60902 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHOX2O60902 AC232323.1-201ENST00000540724 2099 ntBASIC16.8■□□□□ 0.28
SHOX2O60902 REXO1L5P-201ENST00000622260 2098 ntBASIC16.8■□□□□ 0.28
SHOX2O60902 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SHOX2O60902 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHOX2O60902 AC006277.1-201ENST00000624348 1610 ntBASIC16.8■□□□□ 0.28
SHOX2O60902 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
SHOX2O60902 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
SHOX2O60902 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHOX2O60902 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.8■□□□□ 0.28
SHOX2O60902 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHOX2O60902 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.8■□□□□ 0.28
SHOX2O60902 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.8■□□□□ 0.28
SHOX2O60902 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHOX2O60902 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.79■□□□□ 0.28
SHOX2O60902 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHOX2O60902 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHOX2O60902 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SHOX2O60902 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHOX2O60902 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHOX2O60902 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SHOX2O60902 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.79■□□□□ 0.28
SHOX2O60902 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
SHOX2O60902 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHOX2O60902 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.79■□□□□ 0.28
SHOX2O60902 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SHOX2O60902 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.79■□□□□ 0.28
SHOX2O60902 AC092919.2-201ENST00000623631 1645 ntBASIC16.79■□□□□ 0.28
SHOX2O60902 AL137784.3-201ENST00000623858 2288 ntBASIC16.79■□□□□ 0.28
SHOX2O60902 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHOX2O60902 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC16.79■□□□□ 0.28
SHOX2O60902 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
SHOX2O60902 AC012618.2-201ENST00000428058 849 ntBASIC16.79■□□□□ 0.28
SHOX2O60902 AL390955.1-201ENST00000428694 934 ntBASIC16.79■□□□□ 0.28
SHOX2O60902 MTCL1P1-201ENST00000446207 792 ntBASIC16.79■□□□□ 0.28
SHOX2O60902 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SHOX2O60902 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.79■□□□□ 0.28
SHOX2O60902 AP003071.4-201ENST00000562276 1284 ntBASIC16.79■□□□□ 0.28
SHOX2O60902 STK25P1-201ENST00000585406 838 ntBASIC16.79■□□□□ 0.28
SHOX2O60902 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SHOX2O60902 Z99916.2-201ENST00000604037 246 ntBASIC16.79■□□□□ 0.28
SHOX2O60902 AL157888.1-201ENST00000631930 593 ntBASIC16.79■□□□□ 0.28
SHOX2O60902 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.79■□□□□ 0.28
SHOX2O60902 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SHOX2O60902 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHOX2O60902 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHOX2O60902 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.79■□□□□ 0.28
SHOX2O60902 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
SHOX2O60902 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
SHOX2O60902 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHOX2O60902 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
SHOX2O60902 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC16.79■□□□□ 0.28
SHOX2O60902 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC16.79■□□□□ 0.28
SHOX2O60902 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHOX2O60902 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
SHOX2O60902 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHOX2O60902 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHOX2O60902 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHOX2O60902 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHOX2O60902 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHOX2O60902 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHOX2O60902 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SHOX2O60902 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.78■□□□□ 0.28
SHOX2O60902 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHOX2O60902 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms