Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
MSH4O15457 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.76■□□□□ 0.59
MSH4O15457 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSH4O15457 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MSH4O15457 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
MSH4O15457 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSH4O15457 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.76■□□□□ 0.59
MSH4O15457 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSH4O15457 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSH4O15457 CNN2P11-201ENST00000429351 262 ntBASIC18.76■□□□□ 0.59
MSH4O15457 AP000344.2-201ENST00000512987 629 ntBASIC18.76■□□□□ 0.59
MSH4O15457 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSH4O15457 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.76■□□□□ 0.59
MSH4O15457 AC079781.4-201ENST00000641908 219 ntBASIC18.76■□□□□ 0.59
MSH4O15457 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC18.76■□□□□ 0.59
MSH4O15457 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.76■□□□□ 0.59
MSH4O15457 GGT4P-201ENST00000623672 1708 ntBASIC18.76■□□□□ 0.59
MSH4O15457 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC18.76■□□□□ 0.59
MSH4O15457 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.76■□□□□ 0.59
MSH4O15457 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSH4O15457 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSH4O15457 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
MSH4O15457 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSH4O15457 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSH4O15457 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSH4O15457 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MSH4O15457 AC092171.3-201ENST00000610122 2651 ntBASIC18.76■□□□□ 0.59
MSH4O15457 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSH4O15457 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.75■□□□□ 0.59
MSH4O15457 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSH4O15457 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSH4O15457 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSH4O15457 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC18.75■□□□□ 0.59
MSH4O15457 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MSH4O15457 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
MSH4O15457 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MSH4O15457 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MSH4O15457 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSH4O15457 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSH4O15457 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.75■□□□□ 0.59
MSH4O15457 SPCS2P4-201ENST00000436160 681 ntBASIC18.75■□□□□ 0.59
MSH4O15457 RN7SL589P-201ENST00000481268 310 ntBASIC18.75■□□□□ 0.59
MSH4O15457 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.75■□□□□ 0.59
MSH4O15457 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
MSH4O15457 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.75■□□□□ 0.59
MSH4O15457 LINC01225-203ENST00000563550 1244 ntBASIC18.75■□□□□ 0.59
MSH4O15457 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC18.75■□□□□ 0.59
MSH4O15457 SNHG9-202ENST00000564014 471 ntBASIC18.75■□□□□ 0.59
MSH4O15457 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
MSH4O15457 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC18.75■□□□□ 0.59
MSH4O15457 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
MSH4O15457 METTL23-205ENST00000588302 925 ntTSL 5 BASIC18.75■□□□□ 0.59
MSH4O15457 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
MSH4O15457 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MSH4O15457 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSH4O15457 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
MSH4O15457 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
MSH4O15457 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.75■□□□□ 0.59
MSH4O15457 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSH4O15457 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSH4O15457 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH4O15457 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
MSH4O15457 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH4O15457 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
MSH4O15457 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH4O15457 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
MSH4O15457 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
MSH4O15457 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
MSH4O15457 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH4O15457 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
MSH4O15457 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH4O15457 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC18.74■□□□□ 0.59
MSH4O15457 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.74■□□□□ 0.59
MSH4O15457 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.74■□□□□ 0.59
MSH4O15457 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.74■□□□□ 0.59
MSH4O15457 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.74■□□□□ 0.59
MSH4O15457 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC18.74■□□□□ 0.59
MSH4O15457 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC18.74■□□□□ 0.59
MSH4O15457 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
MSH4O15457 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC18.74■□□□□ 0.59
MSH4O15457 AC093520.2-201ENST00000561830 333 ntBASIC18.74■□□□□ 0.59
MSH4O15457 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC18.74■□□□□ 0.59
MSH4O15457 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.74■□□□□ 0.59
MSH4O15457 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18.74■□□□□ 0.59
MSH4O15457 RPS15-212ENST00000593052 629 ntTSL 2 BASIC18.74■□□□□ 0.59
MSH4O15457 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.74■□□□□ 0.59
MSH4O15457 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
MSH4O15457 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
MSH4O15457 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH4O15457 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH4O15457 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH4O15457 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH4O15457 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH4O15457 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH4O15457 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC18.74■□□□□ 0.59
MSH4O15457 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
MSH4O15457 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
MSH4O15457 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH4O15457 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
MSH4O15457 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms