Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM38O00635 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM38O00635 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM38O00635 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM38O00635 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM38O00635 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
TRIM38O00635 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM38O00635 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM38O00635 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM38O00635 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM38O00635 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM38O00635 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
TRIM38O00635 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
TRIM38O00635 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM38O00635 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM38O00635 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
TRIM38O00635 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM38O00635 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.91■□□□□ 0.3
TRIM38O00635 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.91■□□□□ 0.3
TRIM38O00635 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
TRIM38O00635 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM38O00635 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.91■□□□□ 0.3
TRIM38O00635 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM38O00635 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM38O00635 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.91■□□□□ 0.3
TRIM38O00635 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM38O00635 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
TRIM38O00635 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
TRIM38O00635 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM38O00635 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM38O00635 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
TRIM38O00635 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM38O00635 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.91■□□□□ 0.3
TRIM38O00635 RHOQP3-201ENST00000437982 621 ntBASIC16.91■□□□□ 0.3
TRIM38O00635 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.91■□□□□ 0.3
TRIM38O00635 AC002558.1-201ENST00000488906 803 ntBASIC16.91■□□□□ 0.3
TRIM38O00635 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.91■□□□□ 0.3
TRIM38O00635 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.91■□□□□ 0.3
TRIM38O00635 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.91■□□□□ 0.3
TRIM38O00635 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.91■□□□□ 0.3
TRIM38O00635 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
TRIM38O00635 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.91■□□□□ 0.3
TRIM38O00635 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM38O00635 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM38O00635 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRIM38O00635 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.91■□□□□ 0.3
TRIM38O00635 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.91■□□□□ 0.3
TRIM38O00635 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
TRIM38O00635 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.91■□□□□ 0.3
TRIM38O00635 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.9■□□□□ 0.3
TRIM38O00635 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM38O00635 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM38O00635 AC008894.3-201ENST00000624324 3103 ntBASIC16.9■□□□□ 0.3
TRIM38O00635 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
TRIM38O00635 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM38O00635 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM38O00635 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
TRIM38O00635 AC025580.3-201ENST00000617932 1424 ntBASIC16.9■□□□□ 0.3
TRIM38O00635 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM38O00635 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
TRIM38O00635 AL603756.1-201ENST00000606511 2163 ntBASIC16.9■□□□□ 0.3
TRIM38O00635 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM38O00635 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM38O00635 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM38O00635 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM38O00635 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM38O00635 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM38O00635 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.9■□□□□ 0.3
TRIM38O00635 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.9■□□□□ 0.3
TRIM38O00635 AP002472.1-201ENST00000577490 586 ntBASIC16.9■□□□□ 0.3
TRIM38O00635 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.9■□□□□ 0.3
TRIM38O00635 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
TRIM38O00635 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM38O00635 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.9■□□□□ 0.3
TRIM38O00635 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.9■□□□□ 0.3
TRIM38O00635 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM38O00635 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM38O00635 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM38O00635 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
TRIM38O00635 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.9■□□□□ 0.3
TRIM38O00635 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.9■□□□□ 0.3
TRIM38O00635 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM38O00635 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.9■□□□□ 0.3
TRIM38O00635 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.9■□□□□ 0.3
TRIM38O00635 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM38O00635 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRIM38O00635 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.89■□□□□ 0.3
TRIM38O00635 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.3
TRIM38O00635 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
TRIM38O00635 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM38O00635 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM38O00635 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.89■□□□□ 0.29
TRIM38O00635 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
TRIM38O00635 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM38O00635 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM38O00635 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM38O00635 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM38O00635 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM38O00635 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM38O00635 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms