Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 FAM185BP-201ENST00000443595 716 ntBASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 AC112191.1-201ENST00000523689 701 ntBASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 REXO1L3P-201ENST00000622202 1288 ntBASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TMX2-CTNND1H3BSU7 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 TSEN15P1-201ENST00000423257 515 ntBASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 AC004449.1-201ENST00000564240 433 ntBASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 AC011467.4-201ENST00000594891 528 ntBASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 AC092364.2-202ENST00000597012 1073 ntBASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 AC091812.2-201ENST00000619081 385 ntBASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TMX2-CTNND1H3BSU7 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TMX2-CTNND1H3BSU7 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TMX2-CTNND1H3BSU7 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.52■□□□□ 0.23
TMX2-CTNND1H3BSU7 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
TMX2-CTNND1H3BSU7 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.52■□□□□ 0.23
TMX2-CTNND1H3BSU7 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.23
TMX2-CTNND1H3BSU7 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.52■□□□□ 0.23
TMX2-CTNND1H3BSU7 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TMX2-CTNND1H3BSU7 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TMX2-CTNND1H3BSU7 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TMX2-CTNND1H3BSU7 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TMX2-CTNND1H3BSU7 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TMX2-CTNND1H3BSU7 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 AC100803.2-201ENST00000562459 1963 ntBASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 AC129492.6-201ENST00000611383 1305 ntBASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 KRT18P55-202ENST00000578578 1546 ntBASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 MIR770-201ENST00000390219 98 ntBASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TMX2-CTNND1H3BSU7 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.5■□□□□ 0.23
TMX2-CTNND1H3BSU7 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms