Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC15.18■□□□□ 0.02
HIF3AQ9Y2N7 AC021087.4-201ENST00000563761 564 ntBASIC15.18■□□□□ 0.02
HIF3AQ9Y2N7 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC15.18■□□□□ 0.02
HIF3AQ9Y2N7 AC006557.2-201ENST00000592985 1240 ntBASIC15.18■□□□□ 0.02
HIF3AQ9Y2N7 REXO1L3P-201ENST00000622202 1288 ntBASIC15.18■□□□□ 0.02
HIF3AQ9Y2N7 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC15.18■□□□□ 0.02
HIF3AQ9Y2N7 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
HIF3AQ9Y2N7 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HIF3AQ9Y2N7 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HIF3AQ9Y2N7 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC15.18■□□□□ 0.02
HIF3AQ9Y2N7 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC15.18■□□□□ 0.02
HIF3AQ9Y2N7 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HIF3AQ9Y2N7 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HIF3AQ9Y2N7 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HIF3AQ9Y2N7 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HIF3AQ9Y2N7 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HIF3AQ9Y2N7 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 AC002310.6-201ENST00000624451 1377 ntBASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 RAB17-203ENST00000409576 466 ntTSL 3 BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 ELK2BP-201ENST00000415014 1224 ntBASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 AF238378.1-201ENST00000526806 358 ntBASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HIF3AQ9Y2N7 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 AC006504.4-201ENST00000592118 1568 ntBASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 HIST2H3DP1-201ENST00000401004 416 ntBASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 PAM16-208ENST00000573553 722 ntTSL 2 BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 PNMT-203ENST00000581428 677 ntTSL 2 BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 MPDU1-223ENST00000582151 728 ntBASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 CYGB-205ENST00000590175 830 ntTSL 3 BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 AC107918.4-202ENST00000641623 219 ntBASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 PI4KAP1-204ENST00000612579 1703 ntBASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 SNX33P1-201ENST00000592116 1762 ntBASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HIF3AQ9Y2N7 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.15■□□□□ 0.02
HIF3AQ9Y2N7 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.15■□□□□ 0.02
HIF3AQ9Y2N7 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
HIF3AQ9Y2N7 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.15■□□□□ 0.02
HIF3AQ9Y2N7 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HIF3AQ9Y2N7 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HIF3AQ9Y2N7 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HIF3AQ9Y2N7 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms