Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 HMGA1P7-201ENST00000406908 502 ntBASIC16.66■□□□□ 0.26
VPS35Q96QK1 AC023274.1-201ENST00000418278 595 ntBASIC16.66■□□□□ 0.26
VPS35Q96QK1 MCCD1P2-201ENST00000423228 335 ntBASIC16.66■□□□□ 0.26
VPS35Q96QK1 AC074386.1-202ENST00000463561 864 ntBASIC16.66■□□□□ 0.26
VPS35Q96QK1 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 CYP2A7P1-201ENST00000595391 815 ntBASIC16.66■□□□□ 0.26
VPS35Q96QK1 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS35Q96QK1 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 MST1L-201ENST00000442552 2185 ntBASIC16.65■□□□□ 0.26
VPS35Q96QK1 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS35Q96QK1 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.65■□□□□ 0.26
VPS35Q96QK1 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS35Q96QK1 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
VPS35Q96QK1 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 AL645728.1-201ENST00000366221 2101 ntBASIC16.65■□□□□ 0.26
VPS35Q96QK1 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS35Q96QK1 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
VPS35Q96QK1 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.65■□□□□ 0.26
VPS35Q96QK1 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.65■□□□□ 0.26
VPS35Q96QK1 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS35Q96QK1 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
VPS35Q96QK1 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.65■□□□□ 0.26
VPS35Q96QK1 MIR3909-201ENST00000579518 119 ntBASIC16.65■□□□□ 0.26
VPS35Q96QK1 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS35Q96QK1 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
VPS35Q96QK1 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
VPS35Q96QK1 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
VPS35Q96QK1 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 AC005915.1-201ENST00000624912 2018 ntBASIC16.65■□□□□ 0.26
VPS35Q96QK1 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS35Q96QK1 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS35Q96QK1 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms