Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 AL390961.4-201ENST00000623958 2535 ntBASIC16.77■□□□□ 0.28
HMGB4Q8WW32 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB4Q8WW32 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB4Q8WW32 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB4Q8WW32 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
HMGB4Q8WW32 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.77■□□□□ 0.28
HMGB4Q8WW32 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
HMGB4Q8WW32 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB4Q8WW32 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
HMGB4Q8WW32 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.77■□□□□ 0.28
HMGB4Q8WW32 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB4Q8WW32 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.77■□□□□ 0.28
HMGB4Q8WW32 AC142381.1-201ENST00000426099 345 ntBASIC16.77■□□□□ 0.28
HMGB4Q8WW32 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB4Q8WW32 SERBP1P5-201ENST00000510079 1181 ntBASIC16.77■□□□□ 0.28
HMGB4Q8WW32 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.77■□□□□ 0.28
HMGB4Q8WW32 CECR7-204ENST00000609932 568 ntTSL 2 BASIC16.77■□□□□ 0.28
HMGB4Q8WW32 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HMGB4Q8WW32 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
HMGB4Q8WW32 AC100757.3-201ENST00000622361 1406 ntBASIC16.77■□□□□ 0.27
HMGB4Q8WW32 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.77■□□□□ 0.27
HMGB4Q8WW32 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.77■□□□□ 0.27
HMGB4Q8WW32 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HMGB4Q8WW32 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
HMGB4Q8WW32 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.77■□□□□ 0.27
HMGB4Q8WW32 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
HMGB4Q8WW32 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
HMGB4Q8WW32 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HMGB4Q8WW32 AP3S2-216ENST00000617003 1561 ntBASIC16.77■□□□□ 0.27
HMGB4Q8WW32 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HMGB4Q8WW32 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.77■□□□□ 0.27
HMGB4Q8WW32 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.77■□□□□ 0.27
HMGB4Q8WW32 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 AC004890.2-204ENST00000481968 304 ntBASIC16.76■□□□□ 0.27
HMGB4Q8WW32 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.76■□□□□ 0.27
HMGB4Q8WW32 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB4Q8WW32 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
HMGB4Q8WW32 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGB4Q8WW32 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGB4Q8WW32 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
HMGB4Q8WW32 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGB4Q8WW32 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB4Q8WW32 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB4Q8WW32 LINC00895-201ENST00000629028 1637 ntBASIC16.75■□□□□ 0.27
HMGB4Q8WW32 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
HMGB4Q8WW32 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB4Q8WW32 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB4Q8WW32 AC008764.6-201ENST00000595909 2069 ntBASIC16.75■□□□□ 0.27
HMGB4Q8WW32 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB4Q8WW32 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGB4Q8WW32 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB4Q8WW32 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.75■□□□□ 0.27
HMGB4Q8WW32 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.75■□□□□ 0.27
HMGB4Q8WW32 CRB3P1-201ENST00000449338 276 ntBASIC16.75■□□□□ 0.27
HMGB4Q8WW32 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGB4Q8WW32 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB4Q8WW32 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGB4Q8WW32 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.75■□□□□ 0.27
HMGB4Q8WW32 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms